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Akirin1 Gene Detail
Summary
  • Symbol
    Akirin1
  • Name
    akirin 1
  • Synonyms
    6330407G11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915300
    NCBI Gene: 68050
Location & Maps
more
  • Sequence Map
    Chr4:123734559-123750345 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      15787 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 57.42 cM, cytoband D1
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    AKIRIN1, akirin 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    AKIRIN1, akirin 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C1orf108, STRF2
  • Links
    NCBI Gene ID: 79647
    neXtProt AC: NX_Q9H9L7

  • Chr Location
    1p34.3; chr1:38991244-39006065 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    2
  • Gene trapped
    6
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Akirin1
  • Incidental Mutations
Mice homozygous for a knock-out allele are viable, healthy and do not exhibit any gross developmental abnormalities.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008998 VEGA Gene Model | MGI Sequence Detail 15787 C57BL/6J ±  kb
transcript OTTMUST00000020424 VEGA | MGI Sequence Detail 3052 Not Applicable  
polypeptide OTTMUSP00000009363 VEGA | MGI Sequence Detail 191 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    65 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 5
References
more
  • Summaries
    All 25
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:219340 Molyneaux BJ, et al., DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex. Neuron. 2015 Jan 21;85(2):275-88

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/24/2016
MGI 6.04
The Jackson Laboratory