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Rtraf Gene Detail
Summary
  • Symbol
    Rtraf
  • Name
    RNA transcription, translation and transport factor
  • Synonyms
    2700060E02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915295
    NCBI Gene: 68045
  • Gene Overview
    MyGene.info: RTRAF
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:19811402-19823823 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 10.95 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915295
protein coding gene Chr14:19811351-19823824 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021025
protein coding gene Chr14:12520684-12533896 (-)
A/J MGP_AJ_G0020974
protein coding gene Chr14:12238650-12252339 (-)
AKR/J MGP_AKRJ_G0020951
protein coding gene Chr14:12744551-12756754 (-)
BALB/cJ MGP_BALBcJ_G0020977
protein coding gene Chr14:12359665-12372714 (-)
C3H/HeJ MGP_C3HHeJ_G0020761
protein coding gene Chr14:12681029-12694415 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021410
protein coding gene Chr14:13007655-13021067 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018978
protein coding gene Chr14:12587770-12599992 (-)
CAST/EiJ MGP_CASTEiJ_G0020285
protein coding gene Chr14:12440365-12453674 (-)
CBA/J MGP_CBAJ_G0020727
protein coding gene Chr14:13662787-13679360 (-)
DBA/2J MGP_DBA2J_G0020850
protein coding gene Chr14:12081824-12094056 (-)
FVB/NJ MGP_FVBNJ_G0020833
protein coding gene Chr14:11982377-11996546 (-)
LP/J MGP_LPJ_G0020926
protein coding gene Chr14:12739153-12752232 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020859
protein coding gene Chr14:13467203-13479409 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021443
protein coding gene Chr14:12558931-12572046 (-)
PWK/PhJ MGP_PWKPhJ_G0020034
protein coding gene Chr14:11609454-11622345 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019856
protein coding gene Chr14:12310105-12326609 (-)
WSB/EiJ MGP_WSBEiJ_G0020341
protein coding gene Chr14:12529258-12542530 (-)



Homology
more
  • Human Ortholog
    RTRAF, RNA transcription, translation and transport factor
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RTRAF, RNA transcription, translation and transport factor
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C14orf166, CGI99, CGI-99, CLE, CLE7, hCLE, hCLE1, LCRP369, RLLM1
  • Links
    NCBI Gene ID: 51637
    neXtProt AC: NX_Q9Y224
    UniProt: Q9Y224

  • Chr Location
    14q22.1; chr14:51989510-52004702 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9355
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RTRAF
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68045 NCBI Gene Model | MGI Sequence Detail 12422 C57BL/6J ±  kb
transcript NM_026528 RefSeq | MGI Sequence Detail 1510 C57BL/6  
polypeptide Q9CQE8 UniProt | EBI | MGI Sequence Detail 244 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 108
    cDNA 108

    Microarray probesets 6
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:149737 Sansom SN, et al., The level of the transcription factor Pax6 is essential for controlling the balance between neural stem cell self-renewal and neurogenesis. PLoS Genet. 2009 Jun;5(6):e1000511

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory