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Pdf Gene Detail
Summary
  • Symbol
    Pdf
  • Name
    peptide deformylase (mitochondrial)
  • Synonyms
    2610019N19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915273
    NCBI Gene: 68023
  • Gene Overview
    MyGene.info: PDF
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:107046289-107048614 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 53.55 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915273
protein coding gene Chr8:107044698-107048614 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034093
protein coding gene Chr8:109453929-109457855 (-)
A/J MGP_AJ_G0034073
protein coding gene Chr8:105067979-105071827 (-)
AKR/J MGP_AKRJ_G0033999
protein coding gene Chr8:108132998-108136910 (-)
BALB/cJ MGP_BALBcJ_G0034066
protein coding gene Chr8:105265118-105271563 (-)
C3H/HeJ MGP_C3HHeJ_G0033778
protein coding gene Chr8:108856897-108861537 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034586
protein coding gene Chr8:113451438-113455321 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031528
protein coding gene Chr8:98173694-98177615 (-)
CAST/EiJ MGP_CASTEiJ_G0033105
protein coding gene Chr8:108383398-108388598 (-)
CBA/J MGP_CBAJ_G0033751
protein coding gene Chr8:117129326-117135148 (-)
DBA/2J MGP_DBA2J_G0033906
protein coding gene Chr8:104396861-104401040 (-)
FVB/NJ MGP_FVBNJ_G0033851
protein coding gene Chr8:103336574-103340455 (-)
LP/J MGP_LPJ_G0033997
protein coding gene Chr8:109639247-109644076 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033896
protein coding gene Chr8:120244456-120248332 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034604
protein coding gene Chr8:108061504-108066053 (-)
PWK/PhJ MGP_PWKPhJ_G0032806
protein coding gene Chr8:103819815-103823871 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032646
protein coding gene Chr8:106775951-106780009 (-)
WSB/EiJ MGP_WSBEiJ_G0033220
protein coding gene Chr8:108781313-108785228 (-)



Homology
more
  • Human Ortholog
    PDF, peptide deformylase, mitochondrial
  • Vertebrate Orthologs
    8
  • Human Ortholog
    PDF, peptide deformylase, mitochondrial
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 64146
    neXtProt AC: NX_Q9HBH1
    UniProt: Q9HBH1

  • Chr Location
    16q22.1; chr16:69328621-69330595 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68023 NCBI Gene Model | MGI Sequence Detail 2326 C57BL/6J ±  kb
transcript NM_026513 RefSeq | MGI Sequence Detail 1547 C57BL/6  
polypeptide NP_080789 RefSeq | MGI Sequence Detail 231 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
References
more
  • Summaries
    All 18
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory