About   Help   FAQ
1110004E09Rik
Gene Detail
Symbol

Name
ID
1110004E09Rik
RIKEN cDNA 1110004E09 gene
MGI:1915251
Feature Type
protein coding gene
Genetic Map
Chromosome 16
52.17 cM, cytoband C3.3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr16:90925809-90934927 bp, - strand
From VEGA annotation of GRCm38

  9119 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10941  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: C21orf59
Gene Tree: 1110004E09Rik

Human
homologs
C21orf59, chromosome 21 open reading frame 59
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 56683
neXtProt AC: NX_P57076

Human Synonyms: C21orf48, CILD26, FBB18

Human Chr (Location): 21q22.1; chr21:32601674-32612608 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human C21orf59

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(3) Targeted(7)
Genomic Mutations involving 1110004E09Rik (5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
1110004E09Rik interacts with 69 markers (Mir22, Mir34a, Mir93, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component cytoplasm, cytosol, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (158)    Tissues (70)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 140
RT-PCR 18
cDNA source data(42)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN c10h21orf59    NEW 
Molecular
reagents
All nucleic(45) cDNA(43) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000019913 (Evidence)
Ensembl Gene Model ENSMUSG00000022972 (Evidence)
Entrez Gene 68001 (Evidence)
UniGene 45374
DFCI TC1576883, TC1758583
DoTS DT.87072640
NIA Mouse Gene Index U037292
Consensus CDS Project CCDS28321.1
International Mouse Phenotyping Consortium Status 1110004E09Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019913 VEGA Gene Model | MGI Sequence Detail 9119 C57BL/6J ±  kb
transcript OTTMUST00000047484 VEGA | MGI Sequence Detail 1143 Not Applicable 
polypeptide OTTMUSP00000021472 VEGA | MGI Sequence Detail 290 Not Applicable 

For the selected sequences
All sequences(44) RefSeq(2) UniProt(6)
Polymorphisms
SNPs within 2kb(119 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021298 Protein of unknown function DUF2870
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/20/2015
MGI 5.22
The Jackson Laboratory