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Pdzd9 Gene Detail
Summary
  • Symbol
    Pdzd9
  • Name
    PDZ domain containing 9
  • Synonyms
    4930408O21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915233
    NCBI Gene: 67983
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:120257954-120269566 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 64.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    103 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915233
 protein coding gene Chr7:120257954-120276785 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032931
 protein coding gene Chr7:124642028-124653076 (-)
A/J MGP_AJ_G0032914
 protein coding gene Chr7:121400982-121412019 (-)
AKR/J MGP_AKRJ_G0032846
 protein coding gene Chr7:124519410-124530520 (-)
BALB/cJ MGP_BALBcJ_G0032919
 protein coding gene Chr7:121119658-121130712 (-)
C3H/HeJ MGP_C3HHeJ_G0032629
 protein coding gene Chr7:124419711-124430760 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033425
 protein coding gene Chr7:129587158-129600705 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030397
 protein coding gene Chr7:122788165-122799489 (-)
CAST/EiJ MGP_CASTEiJ_G0031957
 protein coding gene Chr7:116179220-116190196 (-)
CBA/J MGP_CBAJ_G0032602
 protein coding gene Chr7:133915435-133926483 (-)
DBA/2J MGP_DBA2J_G0032754
 protein coding gene Chr7:119441853-119452889 (-)
FVB/NJ MGP_FVBNJ_G0032707
 protein coding gene Chr7:119298041-119309172 (-)
LP/J MGP_LPJ_G0032848
 protein coding gene Chr7:126084500-126095543 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032739
 protein coding gene Chr7:135388700-135399756 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033445
 protein coding gene Chr7:123507256-123518302 (-)
PWK/PhJ MGP_PWKPhJ_G0031665
 protein coding gene Chr7:112369693-112380786 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031511
 protein coding gene Chr7:110253810-110264820 (-)
WSB/EiJ MGP_WSBEiJ_G0032070
 protein coding gene Chr7:124431306-124443127 (-)



Homology
more
  • Human Ortholog
    PDZD9, PDZ domain containing 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZD9, PDZ domain containing 9
  • Synonyms
    C16orf65
  • Links
    NCBI Gene ID: 255762
    neXtProt AC: NX_Q8IXQ8
    UniProt: Q8IXQ8

  • Chr Location
    16p12.2; chr16:21957540-22001116 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    60
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030887 Ensembl Gene Model | MGI Sequence Detail 11613 C57BL/6J ±  kb
transcript ENSMUST00000033178 Ensembl | MGI Sequence Detail 2180 Not Applicable  
polypeptide ENSMUSP00000033178 Ensembl | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory