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Pdzd9 Gene Detail
Summary
  • Symbol
    Pdzd9
  • Name
    PDZ domain containing 9
  • Synonyms
    4930408O21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915233
    NCBI Gene: 67983
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:120658731-120670343 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 64.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915233
protein coding gene Chr7:120658731-120677562 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032931
protein coding gene Chr7:124642028-124653076 (-)
A/J MGP_AJ_G0032914
protein coding gene Chr7:121400982-121412019 (-)
AKR/J MGP_AKRJ_G0032846
protein coding gene Chr7:124519410-124530520 (-)
BALB/cJ MGP_BALBcJ_G0032919
protein coding gene Chr7:121119658-121130712 (-)
C3H/HeJ MGP_C3HHeJ_G0032629
protein coding gene Chr7:124419711-124430760 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033425
protein coding gene Chr7:129587158-129600705 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030397
protein coding gene Chr7:122788165-122799489 (-)
CAST/EiJ MGP_CASTEiJ_G0031957
protein coding gene Chr7:116179220-116190196 (-)
CBA/J MGP_CBAJ_G0032602
protein coding gene Chr7:133915435-133926483 (-)
DBA/2J MGP_DBA2J_G0032754
protein coding gene Chr7:119441853-119452889 (-)
FVB/NJ MGP_FVBNJ_G0032707
protein coding gene Chr7:119298041-119309172 (-)
LP/J MGP_LPJ_G0032848
protein coding gene Chr7:126084500-126095543 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032739
protein coding gene Chr7:135388700-135399756 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033445
protein coding gene Chr7:123507256-123518302 (-)
PWK/PhJ MGP_PWKPhJ_G0031665
protein coding gene Chr7:112369693-112380786 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031511
protein coding gene Chr7:110253810-110264820 (-)
WSB/EiJ MGP_WSBEiJ_G0032070
protein coding gene Chr7:124431306-124443127 (-)



Homology
more
  • Human Ortholog
    PDZD9, PDZ domain containing 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    PDZD9, PDZ domain containing 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C16orf65
  • Links
    NCBI Gene ID: 255762
    neXtProt AC: NX_Q8IXQ8
    UniProt: Q8IXQ8

  • Chr Location
    16p12.2; chr16:21957540-22001137 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030887 Ensembl Gene Model | MGI Sequence Detail 11613 C57BL/6J ±  kb
transcript ENSMUST00000033178 Ensembl | MGI Sequence Detail 2180 Not Applicable  
polypeptide ENSMUSP00000033178 Ensembl | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory