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Sumf2 Gene Detail
Summary
  • Symbol
    Sumf2
  • Name
    sulfatase modifying factor 2
  • Synonyms
    2610040F05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915152
    NCBI Gene: 67902
  • Gene Overview
    MyGene.info: SUMF2
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:129846990-129863951 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 68.26 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915152
protein coding gene Chr5:129846986-129864050 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030132
protein coding gene Chr5:133921602-133948845 (+)
A/J MGP_AJ_G0030099
protein coding gene Chr5:128291093-128308223 (+)
AKR/J MGP_AKRJ_G0030033
protein coding gene Chr5:132464850-132482845 (+)
BALB/cJ MGP_BALBcJ_G0030109
protein coding gene Chr5:129639516-129657141 (+)
C3H/HeJ MGP_C3HHeJ_G0029826
protein coding gene Chr5:133016987-133034771 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030562
protein coding gene Chr5:139053223-139079734 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027787
protein coding gene Chr5:122679055-122697435 (+)
CAST/EiJ MGP_CASTEiJ_G0029235
protein coding gene Chr5:132319564-132342683 (+)
CBA/J MGP_CBAJ_G0029796
protein coding gene Chr5:144463833-144484445 (+)
DBA/2J MGP_DBA2J_G0029946
protein coding gene Chr5:128254343-128272208 (+)
FVB/NJ MGP_FVBNJ_G0029902
protein coding gene Chr5:127347054-127366468 (+)
LP/J MGP_LPJ_G0030035
protein coding gene Chr5:134429696-134450786 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029933
protein coding gene Chr5:147806731-147828179 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030603
protein coding gene Chr5:132149004-132167174 (+)
PWK/PhJ MGP_PWKPhJ_G0028949
protein coding gene Chr5:127181075-127199487 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028786
protein coding gene Chr5:129708734-129725013 (+)
WSB/EiJ MGP_WSBEiJ_G0029309
protein coding gene Chr5:132852117-132869827 (+)



Homology
more
  • Human Ortholog
    SUMF2, sulfatase modifying factor 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SUMF2, sulfatase modifying factor 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    pFGE
  • Links
    NCBI Gene ID: 25870
    neXtProt AC: NX_Q8NBJ7
    UniProt: Q8NBJ7

  • Chr Location
    7p11.2; chr7:56064007-56080672 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41037
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SUMF2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67902 NCBI Gene Model | MGI Sequence Detail 16962 C57BL/6J ±  kb
transcript NM_026445 RefSeq | MGI Sequence Detail 2161 C57BL/6  
polypeptide Q8BPG6 UniProt | EBI | MGI Sequence Detail 308 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR016187 C-type lectin fold
    IPR005532 Sulfatase-modifying factor enzyme
Molecular
Reagents
less
  • All nucleic 30
    Genomic 2
    cDNA 28

    Microarray probesets 4
References
more
  • Summaries
    All 36
    Gene Ontology 5
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory