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Slco6b1 Pseudogene Detail
Summary
  • Symbol
    Slco6b1
  • Name
    solute carrier organic anion transporter family, member 6b1
  • Synonyms
    1700022M03Rik
Location & Maps
more
  • Sequence Map
    Chr1:96906176-96997577 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      91402 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.76 cM, cytoband D
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
    Orthology source: HomoloGene
  • Synonyms
    CT48, GST, OATP6A1, OATP-I, OATPY
  • Links
    NCBI Gene ID: 133482
    neXtProt AC: NX_Q86UG4

  • Chr Location
    5q21.1; chr5:102371782-102499656 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    6
  • Genomic Mutations
    2 involving Slco6b1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036859 VEGA Gene Model | MGI Sequence Detail 91402 C57BL/6J ±  kb
transcript OTTMUST00000094675 VEGA | MGI Sequence Detail 2492 Not Applicable  
polypeptide Q6SA09 UniProt | EBI | MGI Sequence Detail 709 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    405 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR002350 Kazal domain
    IPR020846 Major facilitator superfamily domain
    IPR004156 Organic anion transporter polypeptide OATP
Molecular
Reagents
less
  • All nucleic 4
    cDNA 3
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory