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Slco6b1 Pseudogene Detail
Summary
  • Symbol
    Slco6b1
  • Name
    solute carrier organic anion transporter family, member 6b1
  • Synonyms
    1700022M03Rik
Location &
Maps
more
  • Sequence Map
    Chr1:96906176-96997560 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.76 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    405 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915104
pseudogene Chr1:96906176-96997577 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039786
pseudogene Chr1:98640504-98735710 (-)
A/J MGP_AJ_G0039783
pseudogene Chr1:95177681-95270875 (-)
AKR/J MGP_AKRJ_G0039711
pseudogene Chr1:97951404-98054084 (-)
BALB/cJ MGP_BALBcJ_G0039757
pseudogene Chr1:95345553-95428745 (-)
C3H/HeJ MGP_C3HHeJ_G0039414
pseudogene Chr1:98262959-98349551 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040318
pseudogene Chr1:102560513-102651538 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036942
pseudogene Chr1:89547411-89624389 (-)
CAST/EiJ MGP_CASTEiJ_G0038530
pseudogene Chr1:97507733-97598237 (-)
CBA/J MGP_CBAJ_G0039385
pseudogene Chr1:105920020-106029070 (-)
DBA/2J MGP_DBA2J_G0039583
pseudogene Chr1:94399217-94491383 (-)
FVB/NJ MGP_FVBNJ_G0039541
pseudogene Chr1:93399727-93491996 (-)
LP/J MGP_LPJ_G0039621
pseudogene Chr1:99914219-100012257 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0039542
pseudogene Chr1:109479084-109595795 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0040425
pseudogene Chr1:97948967-98054188 (-)
PWK/PhJ MGP_PWKPhJ_G0038208
pseudogene Chr1:93637277-93734233 (-)
SPRET/EiJ MGP_SPRETEiJ_G0037952
pseudogene Chr1:96829812-96921463 (-)
WSB/EiJ MGP_WSBEiJ_G0038764
pseudogene Chr1:97777792-97873481 (-)



Homology
more
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SLCO6A1, solute carrier organic anion transporter family member 6A1
    Orthology source: HomoloGene
  • Synonyms
    CT48, GST, OATP6A1, OATP-I, OATPY
  • Links
    NCBI Gene ID: 133482
    neXtProt AC: NX_Q86UG4
    UniProt: Q86UG4

  • Chr Location
    5q21.1; chr5:102371782-102502213 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67854 NCBI Gene Model | MGI Sequence Detail 91385 C57BL/6J ±  kb
transcript NR_120500 RefSeq | MGI Sequence Detail 2475 Not Specified  
polypeptide Q6SA09 UniProt | EBI | MGI Sequence Detail 709 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 4
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/11/2018
MGI 6.13
The Jackson Laboratory