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Tmem39a Gene Detail
Summary
  • Symbol
    Tmem39a
  • Name
    transmembrane protein 39a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915096
    NCBI Gene: 67846
Location & Maps
more
  • Sequence Map
    Chr16:38558698-38592162 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      33465 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 26.87 cM, cytoband B4
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 55254
    neXtProt AC: NX_Q9NV64

  • Chr Location
    3q13.33; chr3:119428960-119463682 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036539 VEGA Gene Model | MGI Sequence Detail 33465 C57BL/6J ±  kb
transcript OTTMUST00000093688 VEGA | MGI Sequence Detail 1645 Not Applicable  
polypeptide OTTMUSP00000052036 VEGA | MGI Sequence Detail 486 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    254 from dbSNP Build 142
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000032098 transmembrane protein 39A
  • InterPro Domains
    IPR019397 Uncharacterised protein family TMEM39
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
References
more
  • Summaries
    All 31
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/24/2016
MGI 6.04
The Jackson Laboratory