About   Help   FAQ
Tmem39a Gene Detail
Summary
  • Symbol
    Tmem39a
  • Name
    transmembrane protein 39a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915096
    NCBI Gene: 67846
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:38558698-38592162 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 26.87 cM, cytoband B4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915096
protein coding gene Chr16:38558698-38592162 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022819
protein coding gene Chr16:37092798-37127767 (+)
A/J MGP_AJ_G0022784
protein coding gene Chr16:35262815-35296683 (+)
AKR/J MGP_AKRJ_G0022756
protein coding gene Chr16:36593067-36628014 (+)
BALB/cJ MGP_BALBcJ_G0022785
protein coding gene Chr16:35375301-35408767 (+)
C3H/HeJ MGP_C3HHeJ_G0022549
protein coding gene Chr16:36701351-36735203 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023232
protein coding gene Chr16:37938103-37974064 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020747
protein coding gene Chr16:35636177-35668256 (+)
CAST/EiJ MGP_CASTEiJ_G0022075
protein coding gene Chr16:36852975-36888388 (+)
CBA/J MGP_CBAJ_G0022520
protein coding gene Chr16:39599924-39643769 (+)
DBA/2J MGP_DBA2J_G0022652
protein coding gene Chr16:35140072-35173686 (+)
FVB/NJ MGP_FVBNJ_G0022627
protein coding gene Chr16:35167038-35200424 (+)
LP/J MGP_LPJ_G0022720
protein coding gene Chr16:36772411-36807874 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022646
protein coding gene Chr16:38711939-38746928 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023247
protein coding gene Chr16:36559135-36596535 (+)
PWK/PhJ MGP_PWKPhJ_G0021815
protein coding gene Chr16:35554534-35588491 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021646
protein coding gene Chr16:36452163-36490517 (+)
WSB/EiJ MGP_WSBEiJ_G0022119
protein coding gene Chr16:36626210-36659960 (+)



Homology
more
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TMEM39A, transmembrane protein 39A
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55254
    neXtProt AC: NX_Q9NV64
    UniProt: Q9NV64

  • Chr Location
    3q13.33; chr3:119428960-119463682 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67846 NCBI Gene Model | MGI Sequence Detail 33465 C57BL/6J ±  kb
transcript NM_026407 RefSeq | MGI Sequence Detail 2869 C57BL/6  
polypeptide Q9CYC3 UniProt | EBI | MGI Sequence Detail 486 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/13/2019
MGI 6.13
The Jackson Laboratory