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Slc35a4
Gene Detail
Symbol

Name
ID
Slc35a4
solute carrier family 35, member A4
MGI:1915093
Synonyms
2610030J16Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 18
19.46 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:36679579-36683858 bp, + strand
From VEGA annotation of GRCm38

  4280 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12195  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: nucleotide-sugar transporter
Gene Tree: Slc35a4

Human
homologs
Human Homolog SLC35A4, solute carrier family 35, member A4
NCBI Gene ID 113829
neXtProt AC  NX_Q96G79
Human Chr (Location)  5q31.3; chr5:140564835-140569098 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(13) Targeted(2)
Incidental mutations (data from Mutagenetix )
Interactions
Slc35a4 interacts with 148 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process carbohydrate transport, transport
Component Golgi apparatus, Golgi membrane, ...
Function sugar:proton symporter activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (51)    Tissues (4)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 51
cDNA source data(145)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(146) cDNA(145) Primer pair(1)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000035811 (Evidence)
Ensembl Gene ModelENSMUSG00000033272 (Evidence)
Entrez Gene67843 (Evidence)
UniGene273350
DFCITC1625352, TC1583504, TC1606486, TC1718293
DoTSDT.94244992, DT.110661309, DT.101313519, DT.97381505, DT.99862856, DT.97382637
NIA Mouse Gene IndexU165292, U018592
Consensus CDS ProjectCCDS29158.1
International Mouse Knockout Project StatusSlc35a4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035811 VEGA Gene Model | MGI Sequence Detail 4280 C57BL/6J ±  kb
transcript OTTMUST00000091722 VEGA | MGI Sequence Detail 2362 Not Applicable 
polypeptide OTTMUSP00000050547 VEGA | MGI Sequence Detail 324 Not Applicable 

For the selected sequences
All sequences(76) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(62 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007271 Nucleotide-sugar transporter
InterPro IPR021189 UDP/CMP-sugar transporter
Protein Ontology PR:000031845 UDP-sugar transporter protein SLC35A4
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory