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1110051M20Rik Gene Detail
Summary
  • Symbol
    1110051M20Rik
  • Name
    RIKEN cDNA 1110051M20 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915079
    NCBI Gene: 228356
  • Gene Overview
    MyGene.info: C11orf49
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:91275068-91444704 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.63 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    476 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915079
protein coding gene Chr2:91273240-91444714 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026149
protein coding gene Chr2:92595914-92785376 (-)
A/J MGP_AJ_G0026110
protein coding gene Chr2:88887048-89057830 (-)
AKR/J MGP_AKRJ_G0026091
protein coding gene Chr2:91342365-91524260 (-)
BALB/cJ MGP_BALBcJ_G0026119
protein coding gene Chr2:89068057-89244530 (-)
C3H/HeJ MGP_C3HHeJ_G0025870
protein coding gene Chr2:91621888-91806051 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026570
protein coding gene Chr2:95854756-96036145 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023960
protein coding gene Chr2:85394524-85561461 (-)
CAST/EiJ MGP_CASTEiJ_G0025335
protein coding gene Chr2:92160230-92350932 (-)
CBA/J MGP_CBAJ_G0025848
protein coding gene Chr2:99113712-99331988 (-)
DBA/2J MGP_DBA2J_G0025984
protein coding gene Chr2:88489375-88659364 (-)
FVB/NJ MGP_FVBNJ_G0025947
protein coding gene Chr2:87595439-87766655 (-)
LP/J MGP_LPJ_G0026088
protein coding gene Chr2:92804220-92989829 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025973
protein coding gene Chr2:102146983-102348809 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026624
protein coding gene Chr2:91413853-91597669 (-)
PWK/PhJ MGP_PWKPhJ_G0025070
protein coding gene Chr2:88217414-88392659 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024871
protein coding gene Chr2:90980451-91168739 (-)
WSB/EiJ MGP_WSBEiJ_G0025402
protein coding gene Chr2:92011822-92203838 (-)



Homology
more
  • Human Ortholog
    C11orf49, chromosome 11 open reading frame 49
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C11orf49, chromosome 11 open reading frame 49
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 79096
    neXtProt AC: NX_Q9H6J7
    UniProt: Q9H6J7

  • Chr Location
    11p11.2; chr11:46936524-47164381 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040591 Ensembl Gene Model | MGI Sequence Detail 169637 C57BL/6J ±  kb
transcript ENSMUST00000102594 Ensembl | MGI Sequence Detail 1977 Not Applicable  
polypeptide ENSMUSP00000099654 Ensembl | MGI Sequence Detail 331 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR038968 UPF0705 protein C11orf49
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 6
Other
Accession IDs
less
MGI:2139007
References
more
  • Summaries
    All 28
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:227263 Fabre PJ, et al., Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states. Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13964-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory