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Snap47
Gene Detail
Symbol

Name
ID
Snap47
synaptosomal-associated protein, 47
MGI:1915076
Synonyms
1110031B06Rik, SNAP-47
Feature Type
protein coding gene
Genetic Map
Chromosome 11
37.70 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:59407134-59451186 bp, - strand
From VEGA annotation of GRCm38

  44053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14206  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: SNAP47
Gene Tree: Snap47

Human
homologs
SNAP47, synaptosomal-associated protein, 47kDa
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 116841
neXtProt AC: NX_Q5SQN1

Human Synonyms: C1orf142, ESFI5812, HEL170, SNAP-47, SVAP1

Human Chr (Location): 1q42.13; chr1:227734996-227781231 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(22) : Gene trapped(19) Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Snap47 interacts with 105 markers (Mir7b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process exocytosis, long-term synaptic potentiation, ...
Component BLOC-1 complex, cytoplasm, ...
Function SNAP receptor activity, syntaxin binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (57)    Tissues (30)    Images (7)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 7
RNA in situ 9
Northern blot 8
Western blot 33
cDNA source data(125)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase snap47    NEW 
Molecular
reagents
All nucleic(128) cDNA(126) Other(2)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000005789 (Evidence)
Ensembl Gene Model ENSMUSG00000009894 (Evidence)
Entrez Gene 67826 (Evidence)
UniGene 26680
DFCI TC1573488
DoTS DT.101203716, DT.101359799, DT.490941, DT.94173103
NIA Mouse Gene Index U032846
Consensus CDS Project CCDS24767.1
International Mouse Phenotyping Consortium Status Snap47
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005789 VEGA Gene Model | MGI Sequence Detail 44053 C57BL/6J ±  kb
transcript OTTMUST00000012811 VEGA | MGI Sequence Detail 1896 Not Applicable 
polypeptide OTTMUSP00000005955 VEGA | MGI Sequence Detail 413 Not Applicable 

For the selected sequences
All sequences(79) RefSeq(12) UniProt(8)
Polymorphisms
SNPs within 2kb(285 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000727 Target SNARE coiled-coil domain
Protein Ontology PR:000015314 synaptosomal-associated protein 47
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:217856 Corradini I, et al., Epileptiform activity and cognitive deficits in SNAP-25(+/-) mice are normalized by antiepileptic drugs. Cereb Cortex. 2014 Feb;24(2):364-76
All references(39)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory