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Snap47
Gene Detail
 Symbol
Name
ID
Snap47
synaptosomal-associated protein, 47
MGI:1915076
Synonyms 1110031B06Rik, SNAP-47
Feature Type protein coding gene
Genetic Map
Chromosome 11
37.70 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:59407134-59451186 bp, - strand
From VEGA annotation of GRCm38

  44053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14206  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Snap47

Human
homologs
Human Homolog SNAP47, synaptosomal-associated protein, 47kDa
NCBI Gene ID 116841
neXtProt AC  NX_Q5SQN1
Human Synonyms  C1orf142, HEL170, SNAP-47, SVAP1
Human Chr (Location)  1q42.13; chr1:227734996-227781231 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(22) : Gene trapped(19) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snap47 interacts with 106 markers (Mir7b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process long-term synaptic potentiation
Component BLOC-1 complex, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (57)    Tissues (30)    Images (7)
Theiler Stages: 16, 20, 22, 26, 27, 28
Assay TypeResults
Immunohistochemistry 7
RNA in situ 9
Northern blot 8
Western blot 33
cDNA source data(125)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(128) cDNA(126) Other(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000005789 (Evidence)
Ensembl Gene ModelENSMUSG00000009894 (Evidence)
Entrez Gene67826 (Evidence)
UniGene26680
DFCITC1573488
DoTSDT.101203716, DT.101359799, DT.490941, DT.94173103
NIA Mouse Gene IndexU032846
Consensus CDS ProjectCCDS24767.1
International Mouse Knockout Project StatusSnap47
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005789 VEGA Gene Model | MGI Sequence Detail 44053 C57BL/6J ±  kb
transcript OTTMUST00000012811 VEGA | MGI Sequence Detail 1896 Not Applicable 
polypeptide OTTMUSP00000005955 VEGA | MGI Sequence Detail 413 Not Applicable 

For the selected sequences
All sequences(78) RefSeq(12) UniProt(7)
Polymorphisms SNPs within 2kb(285 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000727 Target SNARE coiled-coil domain
Protein Ontology PR:000015314 synaptosomal-associated protein 47
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197846 Jurado S, et al., LTP requires a unique postsynaptic SNARE fusion machinery. Neuron. 2013 Feb 6;77(3):542-58
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory