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Ubxn4 Gene Detail
Summary
  • Symbol
    Ubxn4
  • Name
    UBX domain protein 4
  • Synonyms
    1300013G12Rik, Ubxd2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915062
    NCBI Gene: 67812
  • Gene Overview
    MyGene.info: UBXN4
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:128243964-128279378 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 55.80 cM, cytoband E4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    236 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915062
protein coding gene Chr1:128243898-128279378 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016427
protein coding gene Chr1:131480322-131516306 (+)
A/J MGP_AJ_G0016410
protein coding gene Chr1:126576676-126612858 (+)
AKR/J MGP_AKRJ_G0016375
protein coding gene Chr1:130323536-130361573 (+)
BALB/cJ MGP_BALBcJ_G0016370
protein coding gene Chr1:126949973-126988597 (+)
C3H/HeJ MGP_C3HHeJ_G0016196
protein coding gene Chr1:130485973-130525735 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016831
protein coding gene Chr1:136420500-136456926 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014544
protein coding gene Chr1:119934427-119970197 (+)
CAST/EiJ MGP_CASTEiJ_G0015777
protein coding gene Chr1:129457448-129501093 (+)
CBA/J MGP_CBAJ_G0016169
protein coding gene Chr1:141014907-141054009 (+)
DBA/2J MGP_DBA2J_G0016275
protein coding gene Chr1:125613950-125649944 (+)
FVB/NJ MGP_FVBNJ_G0016274
protein coding gene Chr1:124327704-124367694 (+)
LP/J MGP_LPJ_G0016346
protein coding gene Chr1:132824799-132865568 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016299
protein coding gene Chr1:146867873-146911017 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016867
protein coding gene Chr1:130095925-130131855 (+)
PWK/PhJ MGP_PWKPhJ_G0015563
protein coding gene Chr1:124583383-124620760 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015351
protein coding gene Chr1:129052955-129093072 (+)
WSB/EiJ MGP_WSBEiJ_G0015839
protein coding gene Chr1:130043068-130092439 (+)



Homology
more
  • Human Ortholog
    UBXN4, UBX domain protein 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBXN4, UBX domain protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    erasin, UBXD2, UBXDC1
  • Links
    NCBI Gene ID: 23190
    neXtProt AC: NX_Q92575
    UniProt: Q92575

  • Chr Location
    2q21.3; chr2:135741619-135785063 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 40962
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBXN4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026353 Ensembl Gene Model | MGI Sequence Detail 35415 C57BL/6J ±  kb
transcript ENSMUST00000027592 Ensembl | MGI Sequence Detail 4113 Not Applicable  
polypeptide ENSMUSP00000027592 Ensembl | MGI Sequence Detail 506 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 9
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory