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Snrnp48 Gene Detail
Summary
  • Symbol
    Snrnp48
  • Name
    small nuclear ribonucleoprotein 48 (U11/U12)
  • Synonyms
    1110050F08Rik, 6530403A03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915047
    NCBI Gene: 67797
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:38204938-38227665 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 18.04 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    147 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915047
protein coding gene Chr13:38204914-38227665 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020471
protein coding gene Chr13:36533113-36555611 (+)
A/J MGP_AJ_G0020425
protein coding gene Chr13:35374027-35399639 (+)
AKR/J MGP_AKRJ_G0020403
protein coding gene Chr13:36310141-36334237 (+)
BALB/cJ MGP_BALBcJ_G0020421
protein coding gene Chr13:35474516-35497098 (+)
C3H/HeJ MGP_C3HHeJ_G0020220
protein coding gene Chr13:36137059-36159780 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020854
protein coding gene Chr13:37732676-37757059 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018441
protein coding gene Chr13:33560236-33584256 (+)
CAST/EiJ MGP_CASTEiJ_G0019735
protein coding gene Chr13:35912414-35935058 (+)
CBA/J MGP_CBAJ_G0020181
protein coding gene Chr13:39328552-39353834 (+)
DBA/2J MGP_DBA2J_G0020303
protein coding gene Chr13:34893548-34916558 (+)
FVB/NJ MGP_FVBNJ_G0020282
protein coding gene Chr13:34431482-34453970 (+)
LP/J MGP_LPJ_G0020378
protein coding gene Chr13:36779113-36803000 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020312
protein coding gene Chr13:39427016-39452483 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020897
protein coding gene Chr13:35887945-35911344 (+)
PWK/PhJ MGP_PWKPhJ_G0019490
protein coding gene Chr13:35021551-35044956 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019321
protein coding gene Chr13:34548960-34571286 (+)
WSB/EiJ MGP_WSBEiJ_G0019797
protein coding gene Chr13:36225085-36248613 (+)



Homology
more
  • Human Ortholog
    SNRNP48, small nuclear ribonucleoprotein U11/U12 subunit 48
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNRNP48, small nuclear ribonucleoprotein U11/U12 subunit 48
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf151, dJ336K20B.1, dJ512B11.2
  • Links
    NCBI Gene ID: 154007
    neXtProt AC: NX_Q6IEG0
    UniProt: Q6IEG0

  • Chr Location
    6p24.3; chr6:7590199-7611967 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021431 Ensembl Gene Model | MGI Sequence Detail 22728 C57BL/6J ±  kb
transcript ENSMUST00000091641 Ensembl | MGI Sequence Detail 1785 Not Applicable  
polypeptide ENSMUSP00000089230 Ensembl | MGI Sequence Detail 337 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015337 U11/U12 small nuclear ribonucleoprotein 48 kDa protein
  • InterPro Domains
    IPR022776 TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
    IPR032845 U11/U12 small nuclear ribonucleoprotein 48kDa protein
    IPR036236 Zinc finger C2H2 superfamily
Molecular
Reagents
less
  • All nucleic 59
    cDNA 59

    Microarray probesets 6
Other
Accession IDs
less
MGI:1916038
References
more
  • Summaries
    All 32
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory