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Ahctf1 Gene Detail
Summary
  • Symbol
    Ahctf1
  • Name
    AT hook containing transcription factor 1
  • Synonyms
    6230412P20Rik, Elys
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915033
    NCBI Gene: 226747
  • Gene Overview
    MyGene.info: AHCTF1
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr1:179744894-179803680 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      58787 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 83.62 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    AHCTF1, AT-hook containing transcription factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    AHCTF1, AT-hook containing transcription factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ELYS, MST108, MSTP108, TMBS62
  • Links
    NCBI Gene ID: 25909
    neXtProt AC: NX_Q8WYP5
    UniProt: Q8WYP5

  • Chr Location
    1q44; chr1:246839098-246931978 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice die between E3.5 and E5.5. The inner cell mass cells exhibit impaired proliferation and apoptosis when grown in culture.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic OTTMUSG00000033771 VEGA Gene Model | MGI Sequence Detail 58787 C57BL/6J ±  kb
    transcript OTTMUST00000085085 VEGA | MGI Sequence Detail 8506 Not Applicable  
    polypeptide OTTMUSP00000045923 VEGA | MGI Sequence Detail 2243 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      324 from dbSNP Build 142
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 297
      cDNA 296
      Primer pair 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2138514
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 8
      Gene Ontology 5
      Phenotypes 10
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    Funding Information
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    last database update
    07/10/2018
    MGI 6.12
    The Jackson Laboratory