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Vwa5a Gene Detail
Summary
  • Symbol
    Vwa5a
  • Name
    von Willebrand factor A domain containing 5A
  • Synonyms
    5830475I06Rik, BCSC-1, Loh11cr2a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915026
    NCBI Gene: 67776
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:38718268-38743337 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 20.89 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    288 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915026
protein coding gene Chr9:38718268-38743337 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034612
protein coding gene Chr9:36781749-36806826 (+)
A/J MGP_AJ_G0034590
protein coding gene Chr9:35867790-35892912 (+)
AKR/J MGP_AKRJ_G0034517
protein coding gene Chr9:36566013-36591133 (+)
BALB/cJ MGP_BALBcJ_G0034582
protein coding gene Chr9:35652989-35677986 (+)
C3H/HeJ MGP_C3HHeJ_G0034293
protein coding gene Chr9:37042671-37067748 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035104
protein coding gene Chr9:37985803-38010948 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032026
protein coding gene Chr9:34967311-34992655 (+)
CAST/EiJ MGP_CASTEiJ_G0033614
protein coding gene Chr9:36689041-36731652 (+)
CBA/J MGP_CBAJ_G0034267
protein coding gene Chr9:39293053-39318125 (+)
DBA/2J MGP_DBA2J_G0034425
protein coding gene Chr9:35866541-35891778 (+)
FVB/NJ MGP_FVBNJ_G0034365
protein coding gene Chr9:35049793-35076133 (+)
LP/J MGP_LPJ_G0034508
protein coding gene Chr9:36977264-37002630 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034413
protein coding gene Chr9:41055949-41082764 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035121
protein coding gene Chr9:36487460-36512585 (+)
PWK/PhJ MGP_PWKPhJ_G0033320
protein coding gene Chr9:35708181-35733953 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033154
protein coding gene Chr9:36745637-36770863 (+)
WSB/EiJ MGP_WSBEiJ_G0033729
protein coding gene Chr9:36342841-36367660 (+)



Homology
more
  • Human Ortholog
    VWA5A, von Willebrand factor A domain containing 5A
  • Vertebrate Orthologs
    17
  • Human Ortholog
    VWA5A, von Willebrand factor A domain containing 5A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BCSC1, BCSC-1, LOH11CR2A
  • Links
    NCBI Gene ID: 4013
    neXtProt AC: NX_O00534
    UniProt: O00534

  • Chr Location
    11q24.2; chr11:124115404-124146912 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67776 NCBI Gene Model | MGI Sequence Detail 25070 C57BL/6J ±  kb
transcript NM_172767 RefSeq | MGI Sequence Detail 4157 C57BL/6  
polypeptide Q99KC8 UniProt | EBI | MGI Sequence Detail 793 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 77
    cDNA 77

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143323
References
more
  • Summaries
    All 31
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265607 Naba A, et al., Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression. Sci Rep. 2017 Jan 10;7:40495

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory