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Slc38a2
Gene Detail
Symbol

Name
ID
Slc38a2
solute carrier family 38, member 2
MGI:1915010
Synonyms
5033402L14Rik, mKIAA1382
Feature Type
protein coding gene
Genetic Map
Chromosome 15
52.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:96687394-96699698 bp, - strand
From Ensembl annotation of GRCm38

  12305 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23132  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC38A2
Gene Tree: Slc38a2

Human
homologs
SLC38A2, solute carrier family 38, member 2
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 54407
neXtProt AC: NX_Q96QD8

Human Synonyms: ATA2, PRO1068, SAT2, SNAT2

Human Chr (Location): 12q; chr12:46358188-46372862 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(20) : Gene trapped(16) Radiation induced(1) Targeted(3)
Genomic Mutations involving Slc38a2 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(2)
Interactions
Slc38a2 interacts with 368 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process alanine transport, amino acid transmembrane transport, ...
Component axon, brush border, ...
Function amino acid transmembrane transporter activity, symporter activity
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (149)    Tissues (27)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 137
RT-PCR 12
cDNA source data(20)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc38a2 ; ZFIN slc38a2    NEW 
Molecular
reagents
All nucleic(22) cDNA(20) Primer pair(2)
Microarray probesets(7)
Other database
links
Ensembl Gene Model ENSMUSG00000022462 (Evidence)
Entrez Gene 67760 (Evidence)
DFCI TC1573038, TC1584689, TC1637155, TC1638856, TC1640427
DoTS DT.101739065, DT.103586760, DT.485942, DT.491675, DT.87048336
NIA Mouse Gene Index U036597
Consensus CDS Project CCDS27778.1
International Mouse Phenotyping Consortium Status Slc38a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022462 Ensembl Gene Model | MGI Sequence Detail 12305 C57BL/6J ±  kb
transcript ENSMUST00000023099 Ensembl | MGI Sequence Detail 4626 Not Applicable 
polypeptide ENSMUSP00000023099 Ensembl | MGI Sequence Detail 504 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(74 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane domain
Protein Ontology PR:000015119 sodium-coupled neutral amino acid transporter 2
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:176894 Audette MC, et al., Antenatal dexamethasone treatment in midgestation reduces system A-mediated transport in the late-gestation murine placenta. Endocrinology. 2011 Sep;152(9):3561-70
All references(39)
Other
accession IDs
MGI:2145976

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory