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Ddx47 Gene Detail
Summary
  • Symbol
    Ddx47
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
  • Synonyms
    4930588A18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915005
    NCBI Gene: 67755
  • Gene Overview
    MyGene.info: DDX47
Location & Maps
more
  • Sequence Map
    Chr6:135011612-135023776 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      12165 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 65.77 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    DDX47, DEAD-box helicase 47
  • Vertebrate Orthologs
    10
  • Human Ortholog
    DDX47, DEAD-box helicase 47
    Orthology source: HomoloGene
  • Synonyms
    E4-DBP, HQ0256, MSTP162, RRP3
  • Links
    NCBI Gene ID: 51202
    neXtProt AC: NX_Q9H0S4

  • Chr Location
    12p13.1; chr12:12813346-12829981 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 6092
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: DDX47
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022257 VEGA Gene Model | MGI Sequence Detail 12165 C57BL/6J ±  kb
transcript OTTMUST00000052973 VEGA | MGI Sequence Detail 1764 Not Applicable  
polypeptide OTTMUSP00000025169 VEGA | MGI Sequence Detail 455 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    218 from dbSNP Build 142
Protein
Information
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  • UniProt
    10 Sequences
  • Protein Ontology
    PR:000029389 ATP-dependent RNA helicase DDX47
  • EC
  • InterPro Domains
    IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site
    IPR011545 DEAD/DEAH box helicase domain
    IPR001650 Helicase, C-terminal
    IPR014001 Helicase superfamily 1/2, ATP-binding domain
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR014014 RNA helicase, DEAD-box type, Q motif
Molecular
Reagents
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  • All nucleic 135
    cDNA 135

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141744
References
more
  • Summaries
    All 30
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:148410 Combes AN, et al., Three-dimensional visualization of testis cord morphogenesis, a novel tubulogenic mechanism in development. Dev Dyn. 2009 May;238(5):1033-41

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory