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Slc48a1 Gene Detail
Summary
  • Symbol
    Slc48a1
  • Name
    solute carrier family 48 (heme transporter), member 1
  • Synonyms
    4930570C03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914989
    NCBI Gene: 67739
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:97784365-97792692 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 53.78 cM, cytoband F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    37 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914989
protein coding gene Chr15:97778520-97792692 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022279
protein coding gene Chr15:99457130-99465472 (+)
A/J MGP_AJ_G0022238
protein coding gene Chr15:95525523-95533847 (+)
AKR/J MGP_AKRJ_G0022213
protein coding gene Chr15:98405939-98414264 (+)
BALB/cJ MGP_BALBcJ_G0022244
protein coding gene Chr15:95748692-95757029 (+)
C3H/HeJ MGP_C3HHeJ_G0022014
protein coding gene Chr15:98485047-98493371 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022689
protein coding gene Chr15:103130265-103138726 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020215
protein coding gene Chr15:91470383-91478751 (+)
CAST/EiJ MGP_CASTEiJ_G0021536
protein coding gene Chr15:99353703-99362021 (+)
CBA/J MGP_CBAJ_G0021981
protein coding gene Chr15:106590054-106598379 (+)
DBA/2J MGP_DBA2J_G0022108
protein coding gene Chr15:94974851-94983175 (+)
FVB/NJ MGP_FVBNJ_G0022087
protein coding gene Chr15:93963293-93971630 (+)
LP/J MGP_LPJ_G0022179
protein coding gene Chr15:99565276-99573600 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022107
protein coding gene Chr15:110709687-110718011 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022704
protein coding gene Chr15:98556144-98564468 (+)
PWK/PhJ MGP_PWKPhJ_G0021277
protein coding gene Chr15:95072102-95080439 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021111
protein coding gene Chr15:98327079-98335394 (+)
WSB/EiJ MGP_WSBEiJ_G0021585
protein coding gene Chr15:99075578-99083902 (+)



Homology
more
  • Human Ortholog
    SLC48A1, solute carrier family 48 member 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC48A1, solute carrier family 48 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    hHRG-1, HRG1, HRG-1
  • Links
    NCBI Gene ID: 55652
    neXtProt AC: NX_Q6P1K1
    UniProt: Q6P1K1

  • Chr Location
    12q13.11; chr12:47753605-47782753 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    23 phenotype references
An uncharacterized gene trap insertion does not result in an obvious phenotype during the observation period early in life, although abnormalities may still develop at older age.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67739 NCBI Gene Model | MGI Sequence Detail 8328 C57BL/6J ±  kb
transcript NM_026353 RefSeq | MGI Sequence Detail 2526 C57BL/6  
polypeptide Q9D8M3 UniProt | EBI | MGI Sequence Detail 146 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 157
    cDNA 157

    Microarray probesets 4
References
more
  • Summaries
    All 45
    Diseases 1
    Gene Ontology 2
    Phenotypes 23
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory