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Gabarapl1
Gene Detail
Symbol

Name
ID
Gabarapl1
gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
MGI:1914980
Synonyms
3110025G09Rik, 9130422N19Rik, Apg8l, Atg8l, GECI
Feature Type
protein coding gene
Genetic Map
Chromosome 6
63.39 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:129533200-129542331 bp, + strand
From Ensembl annotation of GRCm38

  9132 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134420  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: microtubule-associated proteins 1 light chain 3A/3B
Gene Tree: Gabarapl1

Human
homologs
Human Homolog GABARAPL1, GABA(A) receptor-associated protein like 1
NCBI Gene ID 23710
neXtProt AC  NX_Q9H0R8
Human Synonyms  APG8L, APG8-LIKE, ATG8, ATG8B, ATG8L, GEC1
Human Chr (Location)  12p13.2; chr12:10212836-10223128 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gabarapl1 interacts with 128 markers (Mir1b, Mir17, Mir18, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (27 annotations)
Process autophagic vacuole assembly, autophagy, ...
Component autophagic vacuole, autophagic vacuole membrane, ...
Function cytoskeletal protein binding, GABA receptor binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (101)    Tissues (17)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 101
cDNA source data(299)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(299) cDNA(299)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000030161 (Evidence)
Entrez Gene57436 (Evidence)
UniGene14638
DFCITC1688165, TC1573094
NIA Mouse Gene IndexU007459
Consensus CDS ProjectCCDS51923.1
International Mouse Knockout Project StatusGabarapl1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030161 Ensembl Gene Model | MGI Sequence Detail 9132 C57BL/6J ±  kb
transcript ENSMUST00000032264 Ensembl | MGI Sequence Detail 1765 Not Applicable 
polypeptide ENSMUSP00000032264 Ensembl | MGI Sequence Detail 117 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(86 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004241 Autophagy protein Atg8 ubiquitin-like
Protein Ontology PR:000007758 gamma-aminobutyric acid receptor-associated protein-like 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:184429 Yu Z, et al., Identification of neuroglobin-interacting proteins using yeast two-hybrid screening. Neuroscience. 2012 Jan 3;200:99-105
All references(41)
Other
accession IDs
MGI:1889388, MGI:1890601, MGI:1920405

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory