About   Help   FAQ
Gabarapl1
Gene Detail
Symbol

Name
ID
Gabarapl1
gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
MGI:1914980
Synonyms
3110025G09Rik, 9130422N19Rik, Apg8l, Atg8l, GECI
Feature Type
protein coding gene
Genetic Map
Chromosome 6
63.39 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:129533200-129542331 bp, + strand
From Ensembl annotation of GRCm38

  9132 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134420  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GABARAPL1
Protein SuperFamily: microtubule-associated proteins 1 light chain 3A/3B
Gene Tree: Gabarapl1

Human
homologs
GABARAPL1, GABA(A) receptor-associated protein like 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 23710
neXtProt AC: NX_Q9H0R8

Human Synonyms: APG8L, APG8-LIKE, ATG8, ATG8B, ATG8L, GEC1

Human Chr (Location): 12p13.2; chr12:10212841-10223128 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Gabarapl1 interacts with 128 markers (Mir1b, Mir17, Mir18, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process autophagosome assembly, autophagy, ...
Component autophagosome, autophagosome membrane, ...
Function cytoskeletal protein binding, GABA receptor binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (101)    Tissues (17)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 101
cDNA source data(299)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: GEISHA GABARAPL1 ; Xenbase gabarapl1    NEW 
Molecular
reagents
All nucleic(299) cDNA(299)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000030161 (Evidence)
Entrez Gene 57436 (Evidence)
UniGene 14638
DFCI TC1688165, TC1573094
NIA Mouse Gene Index U007459
Consensus CDS Project CCDS51923.1
International Mouse Phenotyping Consortium Status Gabarapl1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030161 Ensembl Gene Model | MGI Sequence Detail 9132 C57BL/6J ±  kb
transcript ENSMUST00000032264 Ensembl | MGI Sequence Detail 1765 Not Applicable 
polypeptide ENSMUSP00000032264 Ensembl | MGI Sequence Detail 117 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(86 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004241 Autophagy protein Atg8 ubiquitin-like
Protein Ontology PR:000007758 gamma-aminobutyric acid receptor-associated protein-like 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:184429 Yu Z, et al., Identification of neuroglobin-interacting proteins using yeast two-hybrid screening. Neuroscience. 2012 Jan 3;200:99-105
All references(40)
Other
accession IDs
MGI:1889388, MGI:1890601, MGI:1920405

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/21/2015
MGI 5.22
The Jackson Laboratory