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Stx17 Gene Detail
Summary
  • Symbol
    Stx17
  • Name
    syntaxin 17
  • Synonyms
    4833418L03Rik, 6330411F21Rik, 9030425C21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914977
    NCBI Gene: 67727
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:48124915-48186507 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 26.07 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    446 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914977
protein coding gene Chr4:48124915-48186507 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028271
protein coding gene Chr4:46542056-46604814 (+)
A/J MGP_AJ_G0028230
protein coding gene Chr4:44801870-44861609 (+)
AKR/J MGP_AKRJ_G0028180
protein coding gene Chr4:45938531-46002141 (+)
BALB/cJ MGP_BALBcJ_G0028250
protein coding gene Chr4:44918469-44977985 (+)
C3H/HeJ MGP_C3HHeJ_G0027971
protein coding gene Chr4:46515234-46576709 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028691
protein coding gene Chr4:48226491-48287888 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026000
protein coding gene Chr4:42160648-42215785 (+)
CAST/EiJ MGP_CASTEiJ_G0027410
protein coding gene Chr4:46104753-46163721 (+)
CBA/J MGP_CBAJ_G0027937
protein coding gene Chr4:49783811-49845603 (+)
DBA/2J MGP_DBA2J_G0028087
protein coding gene Chr4:44688269-44747242 (+)
FVB/NJ MGP_FVBNJ_G0028054
protein coding gene Chr4:43956396-44014949 (+)
LP/J MGP_LPJ_G0028186
protein coding gene Chr4:46592869-46655842 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028078
protein coding gene Chr4:52785859-52846731 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028726
protein coding gene Chr4:46138480-46194619 (+)
PWK/PhJ MGP_PWKPhJ_G0027135
protein coding gene Chr4:44807992-44867073 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026963
protein coding gene Chr4:45649884-45710593 (+)
WSB/EiJ MGP_WSBEiJ_G0027488
protein coding gene Chr4:46072050-46132627 (+)



Homology
more
  • Human Ortholog
    STX17, syntaxin 17
  • Vertebrate Orthologs
    9
  • Human Ortholog
    STX17, syntaxin 17
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 55014
    neXtProt AC: NX_P56962
    UniProt: P56962

  • Chr Location
    9q31.1; chr9:99906633-99974537 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67727 NCBI Gene Model | MGI Sequence Detail 61593 C57BL/6J ±  kb
transcript NM_026343 RefSeq | MGI Sequence Detail 5777 C57BL/6  
polypeptide Q9D0I4 UniProt | EBI | MGI Sequence Detail 301 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 78
    cDNA 78

    Microarray probesets 9
Other
Accession IDs
less
MGI:1917982, MGI:1921845, MGI:2140547
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 8
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236240 Hubert V, et al., LAMP-2 is required for incorporating syntaxin-17 into autophagosomes and for their fusion with lysosomes. Biol Open. 2016 Oct 15;5(10):1516-1529

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory