About   Help   FAQ
Atxn7l3b Gene Detail
Summary
  • Symbol
    Atxn7l3b
  • Name
    ataxin 7-like 3B
  • Synonyms
    4921506J03Rik, 6230409E21Rik, ENSMUSG00000074747
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914971
    NCBI Gene: 382423
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:112925430-112929001 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 60.92 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914971
protein coding gene Chr10:112925428-112929026 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017729
protein coding gene Chr10:115476400-115479967 (-)
A/J MGP_AJ_G0017706
protein coding gene Chr10:111088724-111092342 (-)
AKR/J MGP_AKRJ_G0017668
protein coding gene Chr10:114355812-114359380 (-)
BALB/cJ MGP_BALBcJ_G0017669
protein coding gene Chr10:111434059-111437625 (-)
C3H/HeJ MGP_C3HHeJ_G0017494
protein coding gene Chr10:114496749-114500327 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018126
protein coding gene Chr10:119499975-119503548 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015806
protein coding gene Chr10:105793052-105796611 (-)
CAST/EiJ MGP_CASTEiJ_G0017056
protein coding gene Chr10:114649174-114652761 (-)
CBA/J MGP_CBAJ_G0017463
protein coding gene Chr10:124203921-124207498 (-)
DBA/2J MGP_DBA2J_G0017568
protein coding gene Chr10:110245708-110249278 (-)
FVB/NJ MGP_FVBNJ_G0017563
protein coding gene Chr10:109192410-109195979 (-)
LP/J MGP_LPJ_G0017643
protein coding gene Chr10:116117161-116120739 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017592
protein coding gene Chr10:126847084-126850654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018164
protein coding gene Chr10:114311959-114315524 (-)
PWK/PhJ MGP_PWKPhJ_G0016838
protein coding gene Chr10:110268531-110272215 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016628
protein coding gene Chr10:113053294-113056869 (-)
WSB/EiJ MGP_WSBEiJ_G0017116
protein coding gene Chr10:114517538-114521128 (-)



Homology
more
  • Human Ortholog
    ATXN7L3B, ataxin 7 like 3B
  • Vertebrate Orthologs
    7
  • Human Ortholog
    ATXN7L3B, ataxin 7 like 3B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    lnc-SCA7
  • Links
    NCBI Gene ID: 552889
    neXtProt AC: NX_Q96GX2
    UniProt: Q96GX2

  • Chr Location
    12q21.1; chr12:74537771-74541452 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074748 Ensembl Gene Model | MGI Sequence Detail 3572 C57BL/6J ±  kb
transcript ENSMUST00000099276 Ensembl | MGI Sequence Detail 3566 Not Applicable  
polypeptide ENSMUSP00000096882 Ensembl | MGI Sequence Detail 97 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 26
    cDNA 26

    Microarray probesets 8
Other
Accession IDs
less
MGI:1923372, MGI:2143568, MGI:3704370
References
more
  • Summaries
    All 35
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2019
MGI 6.14
The Jackson Laboratory