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Pbdc1 Gene Detail
Summary
  • Symbol
    Pbdc1
  • Name
    polysaccharide biosynthesis domain containing 1
  • Synonyms
    2610029G23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914933
    NCBI Gene: 67683
  • Gene Overview
    MyGene.info: PBDC1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:105079756-105117090 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 46.83 cM, cytoband C3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    128 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914933
protein coding gene ChrX:105079756-105117094 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035994
protein coding gene ChrX:101834688-101872203 (+)
A/J MGP_AJ_G0035975
protein coding gene ChrX:101646988-101685042 (+)
AKR/J MGP_AKRJ_G0035893
protein coding gene ChrX:104856686-104895369 (+)
BALB/cJ MGP_BALBcJ_G0035965
protein coding gene ChrX:100480152-100518142 (+)
C3H/HeJ MGP_C3HHeJ_G0035671
protein coding gene ChrX:102285004-102323503 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036491
protein coding gene ChrX:104760867-104799582 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033319
protein coding gene ChrX:99199946-99238630 (+)
CAST/EiJ MGP_CASTEiJ_G0034957
protein coding gene ChrX:86478326-86516457 (+)
CBA/J MGP_CBAJ_G0035646
protein coding gene ChrX:108059896-108099733 (+)
DBA/2J MGP_DBA2J_G0035800
protein coding gene ChrX:100942525-100979839 (+)
FVB/NJ MGP_FVBNJ_G0035741
protein coding gene ChrX:100232021-100269900 (+)
LP/J MGP_LPJ_G0035893
protein coding gene ChrX:102787315-102824639 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035773
protein coding gene ChrX:112727401-112765362 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036517
protein coding gene ChrX:101491489-101528576 (+)
PWK/PhJ MGP_PWKPhJ_G0034655
protein coding gene ChrX:84012848-84048127 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034483
protein coding gene ChrX:87188945-87225833 (+)
WSB/EiJ MGP_WSBEiJ_G0035097
protein coding gene ChrX:100192419-100231007 (+)



Homology
more
  • Human Ortholog
    PBDC1, polysaccharide biosynthesis domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PBDC1, polysaccharide biosynthesis domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CXorf26
  • Links
    NCBI Gene ID: 51260
    neXtProt AC: NX_Q9BVG4
    UniProt: Q9BVG4

  • Chr Location
    Xq13.3; chrX:76172929-76178310 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9542
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PBDC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031226 Ensembl Gene Model | MGI Sequence Detail 37335 C57BL/6J ±  kb
transcript ENSMUST00000033577 Ensembl | MGI Sequence Detail 2638 Not Applicable  
polypeptide ENSMUSP00000033577 Ensembl | MGI Sequence Detail 198 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR023139 PBDC1-like domain superfamily
    IPR021148 Polysaccharide biosynthesis domain
    IPR008476 Protein PBDC1, metazoa/fungi
Molecular
Reagents
less
  • All nucleic 55
    cDNA 55

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory