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4930542C12Rik Gene Detail
Summary
  • Symbol
    4930542C12Rik
  • Name
    RIKEN cDNA 4930542C12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914898
    NCBI Gene: 67648
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:78394956-78396158 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 43.65 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914898
lncRNA gene Chr9:78394956-78396158 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004650
antisense lncRNA gene Chr9:78899617-78900816 (-)
A/J MGP_AJ_G0004631
antisense lncRNA gene Chr9:76175612-76176815 (-)
AKR/J MGP_AKRJ_G0004614
antisense lncRNA gene Chr9:77978562-77979765 (-)
BALB/cJ MGP_BALBcJ_G0004615
antisense lncRNA gene Chr9:75832023-75833226 (-)
C3H/HeJ MGP_C3HHeJ_G0004564
antisense lncRNA gene Chr9:78496325-78497528 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004765
antisense lncRNA gene Chr9:81021151-81022353 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004215
antisense lncRNA gene Chr9:75407404-75408603 (-)
CAST/EiJ MGP_CASTEiJ_G0004520
antisense lncRNA gene Chr9:78772786-78773982 (-)
CBA/J MGP_CBAJ_G0004558
antisense lncRNA gene Chr9:83884064-83885264 (-)
DBA/2J MGP_DBA2J_G0004573
antisense lncRNA gene Chr9:75816525-75817728 (-)
FVB/NJ MGP_FVBNJ_G0004591
antisense lncRNA gene Chr9:75046907-75048107 (-)
LP/J MGP_LPJ_G0004654
antisense lncRNA gene Chr9:79123958-79125157 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004579
antisense lncRNA gene Chr9:85063400-85064603 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004764
antisense lncRNA gene Chr9:78141986-78143189 (-)
PWK/PhJ MGP_PWKPhJ_G0004474
antisense lncRNA gene Chr9:76006119-76007317 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004414
antisense lncRNA gene Chr9:78340558-78341756 (-)
WSB/EiJ MGP_WSBEiJ_G0004563
antisense lncRNA gene Chr9:78091045-78092244 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 4930542C12Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090724 Ensembl Gene Model | MGI Sequence Detail 1203 C57BL/6J ±  kb
transcript ENSMUST00000171096 Ensembl | MGI Sequence Detail 1203 Not Applicable  
polypeptide Q9D4X9 UniProt | EBI | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Phenotypes 7
  • Earliest
    J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory