4930470P17Rik Gene Detail

Summary

• Symbol
  4930470P17Rik
• Name
  RIKEN cDNA 4930470P17 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1914887
  NCBI Gene: 67637
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:170421338-170443937 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 91.91 cM, cytoband H3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  947 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914887	protein coding gene	Chr2:170419798-170455686 (-)
129S1/SvImJ	ENSMUSG00200040040	protein coding gene	Chr2:167330226-167352831 (-)
A/J	no annotation
AKR/J	ENSMUSG00220032958	protein coding gene	Chr2:166974391-166997006 (-)
BALB/cJ	ENSMUSG00180036598	protein coding gene	Chr2:167121471-167144072 (-)
C3H/HeJ	ENSMUSG00175038550	protein coding gene	Chr2:167893958-167916571 (-)
C57BL/6NJ	ENSMUSG00215027306	protein coding gene	Chr2:167304567-167327174 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024730	protein coding gene	Chr2:162564365-162586572 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210036254	protein coding gene	Chr2:167801614-167824219 (-)
DBA/2J	ENSMUSG00185025865	protein coding gene	Chr2:167515505-167538112 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230011437	protein coding gene	Chr2:169090670-169113268 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  4930470P17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000043583 (Evidence)
• NCBI Gene
  67637

Representative Sequences			Length	Strain/Species
genomic	67637	NCBI Gene Model | MGI Sequence Detail	22600	C57BL/6J
transcript	NR_027825	RefSeq | MGI Sequence Detail	1395	C57BL/6
polypeptide	Q9D542	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 4930470P17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27932	Chr2:170433570-170433575 (-)	10,364 bp