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Atp6v1h
Gene Detail
Symbol

Name
ID
Atp6v1h
ATPase, H+ transporting, lysosomal V1 subunit H
MGI:1914864
Synonyms
0710001F19Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 1
1.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:5070018-5162529 bp, + strand
From VEGA annotation of GRCm38

  92512 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7139  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ATP6V1H
Protein SuperFamily: V-type ATPase, subunit H
Gene Tree: Atp6v1h

Human
homologs
ATP6V1H, ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 51606
neXtProt AC: NX_Q9UI12

Human Synonyms: CGI-11, MSTP042, NBP1, SFD, SFDalpha, SFDbeta, VMA13

Human Chr (Location): 8q11.2; chr8:53715543-53843311 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(17) : Gene trapped(15) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Atp6v1h interacts with 142 markers (Mir7-2, Mir7b, Mir15a, ...)
Expression
Literature Summary: (2 records)
Data Summary: Results (99)    Tissues (99)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 99
cDNA source data(105)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase atp6v1h ; ZFIN atp6v1h    NEW 
Molecular
reagents
All nucleic(107) cDNA(107)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000050145 (Evidence)
Ensembl Gene Model ENSMUSG00000033793 (Evidence)
Entrez Gene 108664 (Evidence)
UniGene 27082
DFCI TC1571848
DoTS DT.110918347, DT.490611, DT.99863159
NIA Mouse Gene Index U000011
Consensus CDS Project CCDS14808.1, CCDS78541.1
International Mouse Phenotyping Consortium Status Atp6v1h
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050145 VEGA Gene Model | MGI Sequence Detail 92512 C57BL/6J ±  kb
transcript OTTMUST00000127490 VEGA | MGI Sequence Detail 2049 Not Applicable 
polypeptide OTTMUSP00000068761 VEGA | MGI Sequence Detail 483 Not Applicable 

For the selected sequences
All sequences(72) RefSeq(20) UniProt(6)
Polymorphisms
SNPs within 2kb(350 from dbSNP Build 137)    SNPs within 2kb including multiple locations(360)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR004908 ATPase, V1 complex, subunit H
InterPro IPR011987 ATPase, V1 complex, subunit H, C-terminal
Protein Ontology PR:000004492 V-type proton ATPase subunit H
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:2138471

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory