About   Help   FAQ
Atp6v1h
Gene Detail
Symbol

Name
ID
Atp6v1h
ATPase, H+ transporting, lysosomal V1 subunit H
MGI:1914864
Synonyms
0710001F19Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 1
1.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:5083173-5162549 bp, + strand
From Ensembl annotation of GRCm38

  79377 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7139  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: V-type ATPase, subunit H
Gene Tree: Atp6v1h

Human
homologs
Human Homolog ATP6V1H, ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H
NCBI Gene ID 51606
neXtProt AC  NX_Q9UI12
Human Synonyms  MSTP042, NBP1, SFD, SFDalpha, SFDbeta, VMA13
Human Chr (Location)  8q11.2; chr8:53715543-53843311 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(17) : Gene trapped(15) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Atp6v1h interacts with 142 markers (Mir7-2, Mir7b, Mir15a, ...)
Expression
Literature Summary: (2 records)
Data Summary: Results (99)    Tissues (99)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 99
cDNA source data(105)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(107) cDNA(107)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000033793 (Evidence)
Entrez Gene108664 (Evidence)
UniGene27082
DFCITC1571848
DoTSDT.99863159, DT.490611, DT.110918347
NIA Mouse Gene IndexU000011
Consensus CDS ProjectCCDS14808.1
International Mouse Knockout Project StatusAtp6v1h
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033793 Ensembl Gene Model | MGI Sequence Detail 79377 C57BL/6J ±  kb
transcript ENSMUST00000044369 Ensembl | MGI Sequence Detail 1976 Not Applicable 
polypeptide ENSMUSP00000040756 Ensembl | MGI Sequence Detail 483 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(18) UniProt(3)
Polymorphisms
SNPs within 2kb(265 from dbSNP Build 137)    SNPs within 2kb including multiple locations(275)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR004908 ATPase, V1 complex, subunit H
InterPro IPR011987 ATPase, V1 complex, subunit H, C-terminal
Protein Ontology PR:000004492 V-type proton ATPase subunit H
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:2138471

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory