4930524B15Rik Gene Detail

Summary

• Symbol
  4930524B15Rik
• Name
  RIKEN cDNA 4930524B15 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1914842
  NCBI Gene: 67592
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:31965592-31979651 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 18.71 cM, cytoband A4
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914842	protein coding gene	Chr11:31965554-31979655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018124	protein coding gene	Chr11:30133871-30148501 (+)
A/J	MGP_AJ_G0018097	protein coding gene	Chr11:29008117-29022143 (+)
AKR/J	MGP_AKRJ_G0018061	protein coding gene	Chr11:29923600-29940493 (+)
BALB/cJ	MGP_BALBcJ_G0018066	protein coding gene	Chr11:29198419-29212514 (+)
C3H/HeJ	MGP_C3HHeJ_G0017879	protein coding gene	Chr11:29867907-29881926 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018518	protein coding gene	Chr11:31129206-31146760 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016173	protein coding gene	Chr11:27539046-27553292 (+)
CAST/EiJ	MGP_CASTEiJ_G0017441	protein coding gene	Chr11:29893254-29908121 (+)
CBA/J	MGP_CBAJ_G0017852	protein coding gene	Chr11:32600094-32615373 (+)
DBA/2J	MGP_DBA2J_G0017962	protein coding gene	Chr11:28807190-28822005 (+)
FVB/NJ	MGP_FVBNJ_G0017956	protein coding gene	Chr11:28617024-28631155 (+)
LP/J	MGP_LPJ_G0018034	protein coding gene	Chr11:30372225-30386294 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017980	protein coding gene	Chr11:33629450-33648772 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018559	protein coding gene	Chr11:30042322-30057285 (+)
PWK/PhJ	MGP_PWKPhJ_G0017223	protein coding gene	Chr11:28945689-28959972 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017017	protein coding gene	Chr11:29742577-29757882 (+)
WSB/EiJ	MGP_WSBEiJ_G0017493	protein coding gene	Chr11:29674710-29691158 (+)

Homology

• Human Ortholog
  C5orf47, chromosome 5 open reading frame 47

• Vertebrate Orthologs
  5

• Human Ortholog
  C5orf47, chromosome 5 open reading frame 47
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:27026

  NCBI Gene ID: 133491

  neXtProt AC: NX_Q569G3

  UniProt: Q569G3

  
  
• Chr Location
  5q35.2; chr5:173989159-174007524 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 12161
  1 human;1 mouse;1 rat;1 chimpanzee;1 macaque, rhesus
  
• HCOP
  human homology predictions: C5orf47
• Gene Tree
  4930524B15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  1 involving 4930524B15Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  11

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 4930524B15Rik interacts with 201 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS24515.1
• UniGene
  78654

• Ensembl
  ENSMUSG00000020299 (Evidence)
• NCBI Gene
  67592

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000020299	Ensembl Gene Model | MGI Sequence Detail	14060	C57BL/6J
transcript	ENSMUST00000102829	Ensembl | MGI Sequence Detail	2000	Not Applicable
polypeptide	ENSMUSP00000099893	Ensembl | MGI Sequence Detail	165	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR031464 Protein of unknown function DUF4680

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

References

• Summaries
  All 22

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930524B15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100808	Chr11:31965542-31965597 (+)	-22 bp
Tssr100809	Chr11:31965604-31965611 (+)	16 bp