4930524B15Rik Gene Detail

Summary

• Symbol
  4930524B15Rik
• Name
  RIKEN cDNA 4930524B15 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1914842
  NCBI Gene: 67592
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr11:31965592-31979651 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    14060 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 18.71 cM, cytoband A4
• Mapping Data
  2 experiments

Homology

• Human Ortholog
  C5orf47, chromosome 5 open reading frame 47

• Vertebrate Orthologs
  5

• Human Ortholog
  C5orf47, chromosome 5 open reading frame 47
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:27026

  NCBI Gene ID: 133491

  neXtProt AC: NX_Q569G3

  UniProt: Q569G3

  
  
• Chr Location
  5q35.2; chr5:173989159-174007524 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 12161
  1 human;1 mouse;1 rat;1 chimpanzee;1 macaque, rhesus
  
• HCOP
  human homology predictions: C5orf47
• Gene Tree
  4930524B15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  1 involving 4930524B15Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  11

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 4930524B15Rik interacts with 201 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS24515.1
• UniGene
  78654

• VEGA
  OTTMUSG00000005367 (Evidence)
• Ensembl
  ENSMUSG00000020299 (Evidence)
• NCBI Gene
  67592

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000005367	VEGA Gene Model | MGI Sequence Detail	14060	C57BL/6J
transcript	OTTMUST00000011974	VEGA | MGI Sequence Detail	2000	Not Applicable
polypeptide	OTTMUSP00000005539	VEGA | MGI Sequence Detail	165	Not Applicable

Polymorphisms

• SNPs within 2kb
  75 from dbSNP Build 142

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR031464 Protein of unknown function DUF4680

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

References

• Summaries
  All 23

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582