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Ubxn11 Gene Detail
Summary
  • Symbol
    Ubxn11
  • Name
    UBX domain protein 11
  • Synonyms
    4930506L07Rik, Soci, Ubxd5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914836
    NCBI Gene: 67586
  • Gene Overview
    MyGene.info: UBXN11
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:134102520-134126784 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 66.50 cM, cytoband D3
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    241 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914836
protein coding gene Chr4:134102520-134127593 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028912
protein coding gene Chr4:136435469-136461145 (+)
A/J MGP_AJ_G0028871
protein coding gene Chr4:130689032-130714658 (+)
AKR/J MGP_AKRJ_G0028823
protein coding gene Chr4:134438438-134464789 (+)
BALB/cJ MGP_BALBcJ_G0028894
protein coding gene Chr4:131340283-131364889 (+)
C3H/HeJ MGP_C3HHeJ_G0028608
protein coding gene Chr4:134674326-134701751 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029336
protein coding gene Chr4:141340656-141367149 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026607
protein coding gene Chr4:123755340-123781087 (+)
CAST/EiJ MGP_CASTEiJ_G0028041
protein coding gene Chr4:132793996-132821448 (+)
CBA/J MGP_CBAJ_G0028573
protein coding gene Chr4:145056355-145087835 (+)
DBA/2J MGP_DBA2J_G0028722
protein coding gene Chr4:131122903-131147871 (+)
FVB/NJ MGP_FVBNJ_G0028690
protein coding gene Chr4:130013986-130040338 (+)
LP/J MGP_LPJ_G0028823
protein coding gene Chr4:136519811-136545071 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028715
protein coding gene Chr4:149555630-149582220 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029374
protein coding gene Chr4:134861202-134885412 (+)
PWK/PhJ MGP_PWKPhJ_G0027761
protein coding gene Chr4:127848844-127874446 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027587
protein coding gene Chr4:130706286-130731656 (+)
WSB/EiJ MGP_WSBEiJ_G0028120
protein coding gene Chr4:135049511-135073995 (+)



Homology
more
  • Human Ortholog
    UBXN11, UBX domain protein 11
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBXN11, UBX domain protein 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    COA-1, PP2243, SOC, SOCI, UBXD5
  • Links
    NCBI Gene ID: 91544
    neXtProt AC: NX_Q5T124
    UniProt: Q5T124

  • Chr Location
    1p36.11; chr1:26282282-26318265 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12159
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBXN11
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67586 NCBI Gene Model | MGI Sequence Detail 24265 C57BL/6J ±  kb
transcript NM_026257 RefSeq | MGI Sequence Detail 1577 C57BL/6  
polypeptide Q9D572 UniProt | EBI | MGI Sequence Detail 484 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-35799, MGI:107333
References
more
  • Summaries
    All 38
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory