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Alg13
Gene Detail
 Symbol
Name
ID
Alg13
asparagine-linked glycosylation 13
MGI:1914824
Synonyms 2810046O15Rik, 4833435D08Rik, Glt28d1, MDS031
Feature Type protein coding gene
Genetic Map
Chromosome X
65.42 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:144317812-144374450 bp, + strand
From VEGA annotation of GRCm38

  56639 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134149  Vertebrate Homology Class
1 mouse; 1 rat

Protein SuperFamily: glycosyltransferase
Gene Tree: Alg13

Mutations,
alleles, and
phenotypes
All mutations/alleles(327) : Gene trapped(324) Targeted(3)
 
Male chimeras hemizygous for a gene trapped allele exhibit embryonic lethality associated with developmetnal patterning defects, cardia bifida, and failure of initiation of embryo turning. Chimeras hemizygous for another gene trapped allele fail to gastrulate.
 
Phenotype Images(44)
Interactions
Alg13 interacts with 411 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process carbohydrate metabolic process, lipid glycosylation, ...
Component endoplasmic reticulum
Function carbohydrate binding, catalytic activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (3)
Theiler Stages: 22
Assay TypeResults
RNA in situ 94
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(9)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000018919 (Evidence)
Ensembl Gene ModelENSMUSG00000041718 (Evidence)
Entrez Gene67574 (Evidence)
DFCITC1582689, TC1602131, TC1602862, TC1652468
DoTSDT.101343227, DT.101356128, DT.487762, DT.97370656
NIA Mouse Gene IndexU020284
EC2.4.1.141, 3.4.19.12
Consensus CDS ProjectCCDS30456.1
International Mouse Knockout Project StatusAlg13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018919 VEGA Gene Model | MGI Sequence Detail 56639 C57BL/6J ±  kb
transcript OTTMUST00000045481 VEGA | MGI Sequence Detail 1794 Not Applicable 
polypeptide OTTMUSP00000020450 VEGA | MGI Sequence Detail 165 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(3) UniProt(4)
Polymorphisms SNPs within 2kb(143 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007235 Glycosyl transferase, family 28, C-terminal
InterPro IPR003323 Ovarian tumour, otubain
InterPro IPR002999 Tudor domain
Protein Ontology PR:000003941 UDP-N-acetylglucosamine transferase subunit ALG13
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)
Other
accession IDs
MGI:1919938, MGI:3709593

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory