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Loxl4
Gene Detail
 Symbol
Name
ID
Loxl4
lysyl oxidase-like 4
MGI:1914823
Synonyms 4833426I20Rik
Feature Type protein coding gene
Genetic Map
Chromosome 19
36.56 cM, cytoband D1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr19:42593982-42612813 bp, - strand
From VEGA annotation of GRCm38

  18832 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12977  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Loxl4

Human
homologs
Human Homolog LOXL4, lysyl oxidase-like 4
NCBI Gene ID 84171
neXtProt AC  NX_Q96JB6
Human Synonyms  LOXC
Human Chr (Location)  10q24; chr10:98247686-98268250 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Loxl4 interacts with 224 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process oxidation-reduction process
Component extracellular region, extracellular vesicular exosome, ...
Function aspartate oxidase activity, copper ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (83)    Tissues (10)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 83
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000035803 (Evidence)
Ensembl Gene ModelENSMUSG00000025185 (Evidence)
Entrez Gene67573 (Evidence)
UniGene178767
DFCITC1584211, TC1589638, TC1605221
DoTSDT.101358230, DT.40166256
NIA Mouse Gene IndexU039052
EC1.4.3.-
Consensus CDS ProjectCCDS29830.1, CCDS50441.1
International Mouse Knockout Project StatusLoxl4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035803 VEGA Gene Model | MGI Sequence Detail 18832 C57BL/6J ±  kb
transcript OTTMUST00000091707 VEGA | MGI Sequence Detail 2617 Not Applicable 
polypeptide OTTMUSP00000050536 VEGA | MGI Sequence Detail 758 Not Applicable 

For the selected sequences
All sequences(49) RefSeq(8) UniProt(7)
Polymorphisms SNPs within 2kb(277 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001695 Lysyl oxidase
InterPro IPR019828 Lysyl oxidase, conserved site
InterPro IPR001190 Speract/scavenger receptor
InterPro IPR017448 Speract/scavenger receptor-related
Protein Ontology PR:000009887 lysyl oxidase homolog 4
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:194542 Ghai R, et al., Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):E643-52
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory