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Slc39a9 Gene Detail
Summary
  • Symbol
    Slc39a9
  • Name
    solute carrier family 39 (zinc transporter), member 9
  • Synonyms
    2010002A02Rik, 2610511I23Rik, 4833420E20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914820
    NCBI Gene: 328133
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:80644163-80683342 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 36.91 cM, cytoband D2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914820
protein coding gene Chr12:80643883-80683342 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019891
protein coding gene Chr12:81026125-81074078 (+)
A/J MGP_AJ_G0019849
protein coding gene Chr12:78084357-78124844 (+)
AKR/J MGP_AKRJ_G0019824
protein coding gene Chr12:80218711-80258951 (+)
BALB/cJ MGP_BALBcJ_G0019828
protein coding gene Chr12:78337627-78377960 (+)
C3H/HeJ MGP_C3HHeJ_G0019634
protein coding gene Chr12:80689540-80730668 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020280
protein coding gene Chr12:83395340-83438337 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017899
protein coding gene Chr12:75078724-75118469 (+)
CAST/EiJ MGP_CASTEiJ_G0019184
protein coding gene Chr12:75544790-75584928 (+)
CBA/J MGP_CBAJ_G0019605
protein coding gene Chr12:86660895-86700225 (+)
DBA/2J MGP_DBA2J_G0019720
protein coding gene Chr12:77696643-77736506 (+)
FVB/NJ MGP_FVBNJ_G0019706
protein coding gene Chr12:76519167-76557982 (+)
LP/J MGP_LPJ_G0019792
protein coding gene Chr12:80954095-80996727 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019745
protein coding gene Chr12:89663781-89704339 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020315
protein coding gene Chr12:79744971-79785431 (+)
PWK/PhJ MGP_PWKPhJ_G0018950
protein coding gene Chr12:72087339-72127521 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018744
protein coding gene Chr12:74257822-74299367 (+)
WSB/EiJ MGP_WSBEiJ_G0019237
protein coding gene Chr12:80387652-80428700 (+)



Homology
more
  • Human Ortholog
    SLC39A9, solute carrier family 39 member 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC39A9, solute carrier family 39 member 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ZIP9, ZIP-9
  • Links
    NCBI Gene ID: 55334
    neXtProt AC: NX_Q9NUM3
    UniProt: Q9NUM3

  • Chr Location
    14q24.1; chr14:69398379-69462390 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Gene trapped
    5
  • Targeted
    2
  • Genomic Mutations
    1 involving Slc39a9
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 328133 NCBI Gene Model | MGI Sequence Detail 39180 C57BL/6J ±  kb
transcript NM_026244 RefSeq | MGI Sequence Detail 5247 C57BL/6  
polypeptide Q8BFU1 UniProt | EBI | MGI Sequence Detail 308 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1917080, MGI:1917287, MGI:2145015
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory