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Cog6
Gene Detail
 Symbol
Name
ID
Cog6
component of oligomeric golgi complex 6
MGI:1914792
Synonyms mKIAA1134
Feature Type protein coding gene
Genetic Map
Chromosome 3
24.10 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:52982123-53017223 bp, - strand
From NCBI annotation of GRCm38

  35101 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10802  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Cog6

Human
homologs
Human Homolog COG6, component of oligomeric golgi complex 6
NCBI Gene ID 57511
neXtProt AC  NX_Q9Y2V7
Human Synonyms  CDG2L, COD2, SHNS
Human Chr (Location)  13q14.11; chr13:39655627-39791665 (+)  GRCh38
Disease Associations  (2) Diseases Associated with Human COG6
Alleles
and
phenotypes
All alleles(4) : Targeted(2) Gene trapped(2)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process glycosylation, intra-Golgi vesicle-mediated transport, ...
Component Golgi apparatus, Golgi transport complex, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (3)    Tissues (2)   
Theiler Stages: 28
Assay TypeResults
RNA in situ 3
cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000027742 (Evidence)
Entrez Gene67542 (Evidence)
DFCITC1574094, TC1595169, TC1595328, TC1629515
DoTSDT.101408776, DT.485444, DT.91310230, DT.99855470
NIA Mouse Gene IndexU024043
Consensus CDS ProjectCCDS50905.1
International Mouse Knockout Project StatusCog6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 67542 NCBI Gene Model | MGI Sequence Detail 35101 C57BL/6J ±  kb
transcript NM_026225 RefSeq | MGI Sequence Detail 2920 C57BL/6 
polypeptide Q8R3I3 UniProt | EBI | MGI Sequence Detail 657 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(381 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010490 Conserved oligomeric Golgi complex subunit 6
Protein Ontology PR:000005689 conserved oligomeric Golgi complex subunit 6
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2139872

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/15/2014
MGI 5.17
The Jackson Laboratory