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Ppfibp1 Gene Detail
Summary
  • Symbol
    Ppfibp1
  • Name
    PTPRF interacting protein, binding protein 1 (liprin beta 1)
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914783
    NCBI Gene: 67533
  • Gene Overview
    MyGene.info: PPFIBP1
Location & Maps
more
  • Sequence Map
    Chr6:146888487-147032025 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      143539 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 77.70 cM, cytoband G3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PPFIBP1, PPFIA binding protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PPFIBP1, PPFIA binding protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    hSGT2, hSgt2p, L2, SGT2
  • Links
    NCBI Gene ID: 8496
    neXtProt AC: NX_Q86W92

  • Chr Location
    12p11.23-p11.22; chr12:27524112-27695564 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022991 VEGA Gene Model | MGI Sequence Detail 143539 C57BL/6J ±  kb
transcript OTTMUST00000055356 VEGA | MGI Sequence Detail 4782 Not Applicable  
polypeptide OTTMUSP00000026501 VEGA | MGI Sequence Detail 980 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    1832 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
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  • All nucleic 138
    Genomic 1
    cDNA 136
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
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MGI:2141668, MGI:2141674
References
more
  • Summaries
    All 33
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:229226 Amaniti EM, et al., Expansion of the piriform cortex contributes to corticothalamic pathfinding defects in Gli3 conditional mutants. Cereb Cortex. 2015 Feb;25(2):460-71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory