1700039M10Rik Gene Detail

Summary

• Symbol
  1700039M10Rik
• Name
  RIKEN cDNA 1700039M10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914768
  NCBI Gene: 67518
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:57809071-57809825 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 30.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914768	lncRNA gene	Chr14:57809071-57809825 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005553	lincRNA gene	Chr14:51772628-51773372 (+)
A/J	MGP_AJ_G0005538	lincRNA gene	Chr14:50739337-50740081 (+)
AKR/J	MGP_AKRJ_G0005517	lincRNA gene	Chr14:52523092-52523836 (+)
BALB/cJ	MGP_BALBcJ_G0005520	lincRNA gene	Chr14:50682410-50683154 (+)
C3H/HeJ	MGP_C3HHeJ_G0005466	lincRNA gene	Chr14:52170538-52171282 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005676	lincRNA gene	Chr14:54323696-54324440 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005044	lincRNA gene	Chr14:48818029-48818834 (+)
CAST/EiJ	MGP_CASTEiJ_G0005409	lincRNA gene	Chr14:48505161-48506104 (+)
CBA/J	MGP_CBAJ_G0005456	lincRNA gene	Chr14:55938789-55939533 (+)
DBA/2J	MGP_DBA2J_G0005471	lincRNA gene	Chr14:50413086-50413831 (+)
FVB/NJ	MGP_FVBNJ_G0005497	lincRNA gene	Chr14:49802704-49803448 (+)
LP/J	MGP_LPJ_G0005556	lincRNA gene	Chr14:52811313-52812057 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005482	lincRNA gene	Chr14:55284377-55285121 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005675	lincRNA gene	Chr14:51672999-51673743 (+)
PWK/PhJ	MGP_PWKPhJ_G0005359	lincRNA gene	Chr14:46954161-46954905 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005277	lincRNA gene	Chr14:47734948-47735694 (+)
WSB/EiJ	MGP_WSBEiJ_G0005459	lincRNA gene	Chr14:51985813-51986558 (+)

Homology

• Gene Tree
  1700039M10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  12
• Genomic Mutations
  1 involving 1700039M10Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000097933 (Evidence)
• NCBI Gene
  67518

Representative Sequences			Length	Strain/Species
genomic	67518	NCBI Gene Model | MGI Sequence Detail	755	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700039M10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125873	Chr14:57809051-57809082 (+)	-4 bp