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Ccdc50 Gene Detail
Summary
  • Symbol
    Ccdc50
  • Name
    coiled-coil domain containing 50
  • Synonyms
    2610529H08Rik, 5730448P06Rik, D16Bwg1543e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914751
    NCBI Gene: 67501
  • Gene Overview
    MyGene.info: CCDC50
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:27388869-27452218 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 18.98 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    334 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914751
protein coding gene Chr16:27388762-27452218 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022700
protein coding gene Chr16:25162773-25221236 (+)
A/J MGP_AJ_G0022663
protein coding gene Chr16:23976810-24032602 (+)
AKR/J MGP_AKRJ_G0022637
protein coding gene Chr16:24937265-24994602 (+)
BALB/cJ MGP_BALBcJ_G0022667
protein coding gene Chr16:24177196-24232673 (+)
C3H/HeJ MGP_C3HHeJ_G0022432
protein coding gene Chr16:25050068-25106882 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023116
protein coding gene Chr16:25693709-25755089 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020634
protein coding gene Chr16:24518522-24575071 (+)
CAST/EiJ MGP_CASTEiJ_G0021960
protein coding gene Chr16:25087863-25149570 (+)
CBA/J MGP_CBAJ_G0022402
protein coding gene Chr16:26822096-26877610 (+)
DBA/2J MGP_DBA2J_G0022535
protein coding gene Chr16:23917951-23976519 (+)
FVB/NJ MGP_FVBNJ_G0022510
protein coding gene Chr16:23896896-23954117 (+)
LP/J MGP_LPJ_G0022602
protein coding gene Chr16:24938092-24995462 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022529
protein coding gene Chr16:26297682-26369247 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023128
protein coding gene Chr16:24898214-24954255 (+)
PWK/PhJ MGP_PWKPhJ_G0021699
protein coding gene Chr16:24187816-24245494 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021530
protein coding gene Chr16:24628870-24691870 (+)
WSB/EiJ MGP_WSBEiJ_G0022004
protein coding gene Chr16:24836604-24892921 (+)



Homology
more
  • Human Ortholog
    CCDC50, coiled-coil domain containing 50
  • Vertebrate Orthologs
    5
  • Human Ortholog
    CCDC50, coiled-coil domain containing 50
    Orthology source: HGNC
  • Synonyms
    C3orf6, DFNA44, YMER
  • Links
    NCBI Gene ID: 152137
    neXtProt AC: NX_Q8IVM0
    UniProt: Q8IVM0

  • Chr Location
    3q28; chr3:191329082-191398670 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human CCDC50 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038127 Ensembl Gene Model | MGI Sequence Detail 63350 C57BL/6J ±  kb
transcript ENSMUST00000100026 Ensembl | MGI Sequence Detail 7089 Not Applicable  
polypeptide ENSMUSP00000097604 Ensembl | MGI Sequence Detail 305 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000005101 coiled-coil domain-containing protein 50
  • InterPro Domains
    IPR039303 Coiled-coil domain-containing protein 50
    IPR029311 Coiled-coil domain-containing protein 50, N-terminal
Molecular
Reagents
less
  • All nucleic 185
    cDNA 172
    Primer pair 13

    Microarray probesets 9
Other
Accession IDs
less
MGD-MRK-35702, MGI:107237, MGI:1917850, MGI:2140546, MGI:2146653
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
  • Latest
    J:130365 Singh S, et al., Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis. Dev Dyn. 2008 Jan;237(1):170-86

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory