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Ccdc50
Gene Detail
Symbol

Name
ID
Ccdc50
coiled-coil domain containing 50
MGI:1914751
Synonyms
2610529H08Rik, 5730448P06Rik, D16Bwg1543e
Feature Type
protein coding gene
Genetic Map
Chromosome 16
18.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr16:27388869-27452218 bp, + strand
From VEGA annotation of GRCm38

  63350 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:69406  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CCDC50
Gene Tree: Ccdc50

Human
homologs
CCDC50, coiled-coil domain containing 50
Orthology source: HGNC

IDs:
NCBI Gene ID: 152137
neXtProt AC: NX_Q8IVM0

Human Synonyms: C3orf6, DFNA44, YMER

Human Chr (Location): 3q28; chr3:191329082-191398670 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CCDC50

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(5) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ccdc50 interacts with 457 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (1 annotations)
Component cytoplasm
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (125)    Tissues (35)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 46
Northern blot 10
Western blot 3
RT-PCR 66
cDNA source data(169)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ccdc50    NEW 
Molecular
reagents
All nucleic(183) cDNA(170) Primer pair(13)
Microarray probesets(9)
Other database
links
VEGA Gene Model OTTMUSG00000023490 (Evidence)
Ensembl Gene Model ENSMUSG00000038127 (Evidence)
Entrez Gene 67501 (Evidence)
UniGene 258985
DFCI TC1580594, TC1593317, TC1602011, TC1633571, TC1634923, TC1655816, TC1666565
DoTS DT.101166449, DT.101368393, DT.101386786, DT.522230
NIA Mouse Gene Index U016978
Consensus CDS Project CCDS37305.1, CCDS37306.1
International Mouse Phenotyping Consortium Status Ccdc50
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023490 VEGA Gene Model | MGI Sequence Detail 63350 C57BL/6J ±  kb
transcript OTTMUST00000057171 VEGA | MGI Sequence Detail 7089 Not Applicable 
polypeptide OTTMUSP00000027556 VEGA | MGI Sequence Detail 305 Not Applicable 

For the selected sequences
All sequences(84) RefSeq(12) UniProt(4)
Polymorphisms
SNPs within 2kb(343 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000005101 coiled-coil domain-containing protein 50
References
(Earliest) J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
(Latest) J:130365 Singh S, et al., Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis. Dev Dyn. 2008 Jan;237(1):170-86
All references(37)
Other
accession IDs
MGD-MRK-35702, MGI:107237, MGI:1917850, MGI:2140546, MGI:2146653

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory