Ccdc50
Gene Detail

Symbol

Name
ID

Ccdc50
coiled-coil domain containing 50
MGI:1914751

Synonyms

2610529H08Rik, 5730448P06Rik, D16Bwg1543e

Feature Type

protein coding gene

Genetic Map

Chromosome 16
18.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)

Sequence Map

Chr16:27388869-27452218 bp, + strand From VEGA annotation of GRCm38   63350 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:69406  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 western clawed frog; 1 zebrafish

Gene Tree: Ccdc50

Mutations,
alleles, and
phenotypes

All mutations/alleles(7) : Gene trapped(5) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )

Interactions

Ccdc50 interacts with 457 markers (Mir1a-1, Mir1a-2, Mir1b, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (1 annotations)

Component

cytoplasm

External Resources: FuncBase

Expression

Literature Summary: (3 records)

Data Summary: Results (125)    Tissues (35)    Tissue x Stage Matrix (view)

Assay Type	Results
Immunohistochemistry	46
Northern blot	10
Western blot	3
RT-PCR	66

cDNA source data(169)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(183) cDNA(170) Primer pair(13)
Microarray probesets(9)

Other database
links

VEGA Gene Model	OTTMUSG00000023490 (Evidence)
Ensembl Gene Model	ENSMUSG00000038127 (Evidence)
Entrez Gene	67501 (Evidence)
UniGene	258985
DFCI	TC1593317, TC1580594, TC1633571, TC1602011, TC1634923, TC1666565, TC1655816
DoTS	DT.101166449, DT.101368393, DT.101386786, DT.522230
NIA Mouse Gene Index	U016978
Consensus CDS Project	CCDS37305.1, CCDS37306.1
International Mouse Knockout Project Status	Ccdc50

Sequences

Length	Strain/Species
genomic	OTTMUSG00000023490	VEGA Gene Model | MGI Sequence Detail	63350	C57BL/6J
transcript	OTTMUST00000057171	VEGA | MGI Sequence Detail	7089	Not Applicable
polypeptide	OTTMUSP00000027556	VEGA | MGI Sequence Detail	305	Not Applicable

All sequences(80) RefSeq(8) UniProt(4)

Polymorphisms

SNPs within 2kb(343 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
Protein Ontology	PR:000005101	coiled-coil domain-containing protein 50

References

(Earliest) J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
(Latest) J:130365 Singh S, et al., Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis. Dev Dyn. 2008 Jan;237(1):170-86
All references(39)

Other
accession IDs

MGD-MRK-35702, MGI:107237, MGI:1917850, MGI:2140546, MGI:2146653