Calcoco1 MGI Mouse Gene Detail - MGI:1914738 - calcium binding and coiled coil domain 1

Calcoco1 Gene Detail

Symbol

Calcoco1
Name

calcium binding and coiled coil domain 1
Synonyms

1810009B06Rik, CoCoA, Gcap11

Feature Type

protein coding gene
IDs

MGI:1914738
NCBI Gene: 67488
Gene Overview

MyGene.info: CALCOCO1
Alliance

gene page

Sequence Map

Chr15:102706779-102722178 bp, - strand
From VEGA annotation of GRCm38

Mouse Genome Browser
Download
Sequence

15400 bp ± kb flank
Genome Browsers

VEGA | Ensembl | UCSC | NCBI

Genetic Map

Chromosome 15, 57.81 cM, cytoband F3
Mapping Data

3 experiments

Human Ortholog

CALCOCO1, calcium binding and coiled-coil domain 1

Vertebrate Orthologs

11

Human Ortholog

CALCOCO1, calcium binding and coiled-coil domain 1
Orthology source: HomoloGene, HGNC
Synonyms

calphoglin, Cocoa, PP13275
Links

HGNC:29306

NCBI Gene ID: 57658

neXtProt AC: NX_Q9P1Z2

UniProt: Q9P1Z2
Chr Location

12q13.13; chr12:53711118-53727523 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 10845
1 human;1 mouse;2 rat;1 chimpanzee;1 cattle;1 dog;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: CALCOCO1
Gene Tree

Calcoco1

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References

1 with disease annotations

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Phenotype Summary

24 phenotype references

All Mutations and Alleles

9
Gene trapped

1
Radiation induced

2
Targeted

6
Genomic Mutations

2 involving Calcoco1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

17 strains or lines available

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All GO Annotations

29
GO References

6

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

7
Tissues

3
cDNA Data

82
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Calcoco1 interacts with 169 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

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All Sequences

46
RefSeq

2
UniProt

6
CCDS

CCDS27889.1
UniGene

71682

			Length	Strain/Species	Flank
genomic	OTTMUSG00000035802	VEGA Gene Model \| MGI Sequence Detail	15400	C57BL/6J	± kb
transcript	OTTMUST00000091678	VEGA \| MGI Sequence Detail	2822	Not Applicable
polypeptide	OTTMUSP00000050516	VEGA \| MGI Sequence Detail	691	Not Applicable

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SNPs within 2kb

81 from dbSNP Build 142

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UniProt

6 Sequences
Protein Ontology

PR:000004970 calcium-binding and coiled-coil domain-containing protein 1

(term hierarchy)
InterPro Domains

IPR012852 Calcium binding and coiled-coil domain-like

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All nucleic 83

cDNA 83

Microarray probesets 3

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MGD-MRK-18684, MGI:101860

Summaries

All 51

Developmental Gene Expression 2

Diseases 1

Gene Ontology 6

Phenotypes 24
Earliest

J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
Latest

J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 07/31/2018 MGI 6.12