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Calcoco1 Gene Detail
Summary
  • Symbol
    Calcoco1
  • Name
    calcium binding and coiled coil domain 1
  • Synonyms
    1810009B06Rik, CoCoA, Gcap11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914738
    NCBI Gene: 67488
  • Gene Overview
    MyGene.info: CALCOCO1
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:102706777-102722178 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 57.81 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    81 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914738
 protein coding gene Chr15:102706777-102722178 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022423
 protein coding gene Chr15:104917022-104932485 (-)
A/J MGP_AJ_G0022385
 protein coding gene Chr15:100780907-100796306 (-)
AKR/J MGP_AKRJ_G0022360
 protein coding gene Chr15:103843814-103859257 (-)
BALB/cJ MGP_BALBcJ_G0022389
 protein coding gene Chr15:100827025-100842424 (-)
C3H/HeJ MGP_C3HHeJ_G0022156
 protein coding gene Chr15:103915893-103931271 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022838
 protein coding gene Chr15:108806188-108823556 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020361
 protein coding gene Chr15:96553431-96569231 (-)
CAST/EiJ MGP_CASTEiJ_G0021682
 protein coding gene Chr15:104781628-104797807 (-)
CBA/J MGP_CBAJ_G0022125
 protein coding gene Chr15:112630179-112648094 (-)
DBA/2J MGP_DBA2J_G0022256
 protein coding gene Chr15:100054944-100070753 (-)
FVB/NJ MGP_FVBNJ_G0022232
 protein coding gene Chr15:99118557-99134700 (-)
LP/J MGP_LPJ_G0022325
 protein coding gene Chr15:105057292-105072692 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022254
 protein coding gene Chr15:116169767-116186338 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022850
 protein coding gene Chr15:103881214-103899747 (-)
PWK/PhJ MGP_PWKPhJ_G0021422
 protein coding gene Chr15:100225494-100241901 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021254
 protein coding gene Chr15:103712618-103729591 (-)
WSB/EiJ MGP_WSBEiJ_G0021732
 protein coding gene Chr15:104495575-104511913 (-)



Homology
more
  • Human Ortholog
    CALCOCO1, calcium binding and coiled-coil domain 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    CALCOCO1, calcium binding and coiled-coil domain 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    calphoglin, Cocoa, PP13275
  • Links
    NCBI Gene ID: 57658
    neXtProt AC: NX_Q9P1Z2
    UniProt: Q9P1Z2

  • Chr Location
    12q13.13; chr12:53711118-53727523 (-)  GRCh38.p7
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    28
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    7
  • Tissues
    3
  • cDNA Data
    82
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67488 NCBI Gene Model | MGI Sequence Detail 15402 C57BL/6J ±  kb
transcript NM_026192 RefSeq | MGI Sequence Detail 2840 C57BL/6  
polypeptide Q8CGU1 UniProt | EBI | MGI Sequence Detail 691 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 83
    cDNA 83

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-18684, MGI:101860
References
more
  • Summaries
    All 51
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 6
    Phenotypes 25
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/01/2019
MGI 6.14 		The Jackson Laboratory