Nudcd1 MGI Mouse Gene Detail - MGI:1914679

Symbol

Nudcd1
Name

NudC domain containing 1
Synonyms

4921532K09Rik

Feature Type

protein coding gene
IDs

MGI:1914679
NCBI Gene: 67429
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr15:44238623-44291703 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 15, 16.91 cM
Mapping Data

2 experiments

SNPs within 2kb

424 from dbSNP Build 142
Strain Annotations

17

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914679	protein coding gene	Chr15:44236559-44291703 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021829	protein coding gene	Chr15:42992102-43045677 (-)
A/J	MGP_AJ_G0021789	protein coding gene	Chr15:41348377-41405440 (-)
AKR/J	MGP_AKRJ_G0021770	protein coding gene	Chr15:42563792-42627752 (-)
BALB/cJ	MGP_BALBcJ_G0021796	protein coding gene	Chr15:41430852-41485158 (-)
C3H/HeJ	MGP_C3HHeJ_G0021570	protein coding gene	Chr15:42484328-42539329 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022235	protein coding gene	Chr15:44657022-44710070 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019772	protein coding gene	Chr15:38889239-38943909 (-)
CAST/EiJ	MGP_CASTEiJ_G0021087	protein coding gene	Chr15:43010407-43064251 (-)
CBA/J	MGP_CBAJ_G0021539	protein coding gene	Chr15:46207572-46271391 (-)
DBA/2J	MGP_DBA2J_G0021663	protein coding gene	Chr15:41154503-41214100 (-)
FVB/NJ	MGP_FVBNJ_G0021641	protein coding gene	Chr15:40457917-40511025 (-)
LP/J	MGP_LPJ_G0021733	protein coding gene	Chr15:42754902-42811770 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021665	protein coding gene	Chr15:49580210-49646614 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022258	protein coding gene	Chr15:42757933-42818478 (-)
PWK/PhJ	MGP_PWKPhJ_G0020832	protein coding gene	Chr15:41195698-41261309 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0021142	protein coding gene	Chr15:42656074-42707091 (-)

Human Ortholog

NUDCD1, NudC domain containing 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

NUDCD1, NudC domain containing 1
Synonyms

CML66, OVA66
Links

HGNC:24306

NCBI Gene ID: 84955

neXtProt AC: NX_Q96RS6

UniProt: Q96RS6
Chr Location

8q23.1; chr8:109240919-109334121 (-) GRCh38

MGI Vertebrate Homology

Nudcd1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: NUDCD1
Gene Tree

Nudcd1

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Phenotype Summary

11 phenotype references

All Mutations and Alleles

9
Chemically induced (other)

2
Endonuclease-mediated

1
Gene trapped

4
Targeted

2
Genomic Mutations

2 involving Nudcd1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

21 strains or lines available

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All GO Annotations

4
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

707
Tissues

1
cDNA Data

18
Literature Summary

1

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase nudcd1

ZFIN nudcd1

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All Sequences

59
RefSeq

4
UniProt

5
CCDS

CCDS27455.1, CCDS88761.1

Ensembl

ENSMUSG00000038736 (Evidence)
NCBI Gene

67429

			Length	Strain/Species	Flank
genomic	67429	NCBI Gene Model \| MGI Sequence Detail	53081	C57BL/6J	± kb
transcript	NM_026149	RefSeq \| MGI Sequence Detail	3447	C57BL/6
polypeptide	Q6PIP5	UniProt \| EBI \| MGI Sequence Detail	582	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000029658 NudC domain-containing protein 1

(term hierarchy)
InterPro Domains

IPR007052 CS domain

IPR008978 HSP20-like chaperone

IPR037895 NudC domain-containing protein 1

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All nucleic 20

cDNA 20

Microarray probesets 6

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MGI:2145888, MGI:2146211, MGI:2146240

Summaries

All 35

Developmental Gene Expression 1

Gene Ontology 2

Phenotypes 11
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Nudcd1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134197	Chr15:44291699-44291733 (-)	-13 bp
Tssr134196	Chr15:44291223-44291308 (-)	437 bp
Tssr134195	Chr15:44291190-44291209 (-)	503 bp
Tssr134194	Chr15:44286066-44286067 (-)	5,636 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23