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Gtf3c6 Gene Detail
Summary
  • Symbol
    Gtf3c6
  • Name
    general transcription factor IIIC, polypeptide 6, alpha
  • Synonyms
    2410016F19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914621
    NCBI Gene: 67371
Location & Maps
more
  • Sequence Map
    Chr10:40249203-40257665 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      8463 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 21.79 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    GTF3C6, general transcription factor IIIC subunit 6
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GTF3C6, general transcription factor IIIC subunit 6
    Orthology source: HGNC, HomoloGene
  • Synonyms
    bA397G5.3, C6orf51, TFIIIC35
  • Links
    NCBI Gene ID: 112495
    neXtProt AC: NX_Q969F1

  • Chr Location
    6q21; chr6:110958560-110967888 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    19
  • Chemically induced (other)
    1
  • Gene trapped
    15
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Gtf3c6
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000019837 Ensembl Gene Model | MGI Sequence Detail 8463 C57BL/6J ±  kb
transcript ENSMUST00000019982 Ensembl | MGI Sequence Detail 1020 Not Applicable  
polypeptide ENSMUSP00000019982 Ensembl | MGI Sequence Detail 227 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    49 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000008330 general transcription factor 3C polypeptide 6
  • InterPro Domains
    IPR019481 Transcription factor TFIIIC, tau55-related
Molecular
Reagents
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  • All nucleic 56
    cDNA 56

    Microarray probesets 4
Other
Accession IDs
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MGI:2143735
References
more
  • Summaries
    All 26
    Gene Ontology 2
    Phenotypes 12
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory