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Gtf3c6 Gene Detail
Summary
  • Symbol
    Gtf3c6
  • Name
    general transcription factor IIIC, polypeptide 6, alpha
  • Synonyms
    2410016F19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914621
    NCBI Gene: 67371
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:40247701-40257856 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 21.79 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914621
protein coding gene Chr10:40247701-40258108 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017161
protein coding gene Chr10:38796022-38804512 (-)
A/J MGP_AJ_G0017138
protein coding gene Chr10:37755658-37764083 (-)
AKR/J MGP_AKRJ_G0017098
protein coding gene Chr10:38286984-38295428 (-)
BALB/cJ MGP_BALBcJ_G0017101
protein coding gene Chr10:37824274-37832854 (-)
C3H/HeJ MGP_C3HHeJ_G0016921
protein coding gene Chr10:38616726-38626299 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017559
protein coding gene Chr10:40004096-40012482 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015255
protein coding gene Chr10:35725375-35733828 (-)
CAST/EiJ MGP_CASTEiJ_G0016500
protein coding gene Chr10:38799842-38808004 (-)
CBA/J MGP_CBAJ_G0016895
protein coding gene Chr10:41838247-41846676 (-)
DBA/2J MGP_DBA2J_G0017000
protein coding gene Chr10:37274097-37282551 (-)
FVB/NJ MGP_FVBNJ_G0016995
protein coding gene Chr10:36771814-36780656 (-)
LP/J MGP_LPJ_G0017077
protein coding gene Chr10:38776601-38785787 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017025
protein coding gene Chr10:42676053-42684308 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017596
protein coding gene Chr10:38273018-38281527 (-)
PWK/PhJ MGP_PWKPhJ_G0016280
protein coding gene Chr10:37143174-37150726 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016064
protein coding gene Chr10:38105398-38111886 (-)
WSB/EiJ MGP_WSBEiJ_G0016563
protein coding gene Chr10:38573501-38581873 (-)



Homology
more
  • Human Ortholog
    GTF3C6, general transcription factor IIIC subunit 6
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GTF3C6, general transcription factor IIIC subunit 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA397G5.3, C6orf51, TFIIIC35
  • Links
    NCBI Gene ID: 112495
    neXtProt AC: NX_Q969F1
    UniProt: Q969F1

  • Chr Location
    6q21; chr6:110958560-110967888 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    19
  • Chemically induced (other)
    1
  • Gene trapped
    15
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Gtf3c6
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 67371 NCBI Gene Model | MGI Sequence Detail 10156 C57BL/6J ±  kb
transcript NM_001359492 RefSeq | MGI Sequence Detail 2591 C57BL/6  
polypeptide Q9D8P7 UniProt | EBI | MGI Sequence Detail 227 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000008330 general transcription factor 3C polypeptide 6
  • InterPro Domains
    IPR019481 Transcription factor TFIIIC, triple barrel domain
Molecular
Reagents
less
  • All nucleic 57
    cDNA 57

    Microarray probesets 4
Other
Accession IDs
less
MGI:2143735
References
more
  • Summaries
    All 34
    Gene Ontology 3
    Phenotypes 12
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory