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Cstf1 Gene Detail
Summary
  • Symbol
    Cstf1
  • Name
    cleavage stimulation factor, 3' pre-RNA, subunit 1
  • Synonyms
    1700057K18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914587
    NCBI Gene: 67337
  • Gene Overview
    MyGene.info: CSTF1
Location & Maps
more
  • Sequence Map
    Chr2:172370681-172382448 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11768 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 94.84 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CSTF1, cleavage stimulation factor subunit 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CSTF1, cleavage stimulation factor subunit 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CstF-50, CstFp50
  • Links
    NCBI Gene ID: 1477
    neXtProt AC: NX_Q05048

  • Chr Location
    20q13.2; chr20:56392371-56404526 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    16
  • Gene trapped
    15
  • Targeted
    1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016157 VEGA Gene Model | MGI Sequence Detail 11768 C57BL/6J ±  kb
transcript OTTMUST00000038654 VEGA | MGI Sequence Detail 3451 Not Applicable  
polypeptide OTTMUSP00000017291 VEGA | MGI Sequence Detail 431 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    171 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000005975 cleavage stimulation factor subunit 1
  • InterPro Domains
    IPR032028 Cleavage stimulation factor subunit 1, dimerisation domain
    IPR001680 WD40 repeat
    IPR019775 WD40 repeat, conserved site
    IPR017986 WD40-repeat-containing domain
    IPR015943 WD40/YVTN repeat-like-containing domain
Molecular
Reagents
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  • All nucleic 74
    cDNA 74

    Microarray probesets 6
Other
Accession IDs
less
MGI:2139050
References
more
  • Summaries
    All 30
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory