3110070M22Rik Gene Detail

Summary

• Symbol
  3110070M22Rik
• Name
  RIKEN cDNA 3110070M22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914554
  NCBI Gene: 67304
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:119623793-119624920 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 67.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  275 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914554	lncRNA gene	Chr13:119623787-119624953 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195000924	protein coding gene	Chr13:114597794-114599166 (-)
A/J	ENSMUSG00195000977	lncRNA gene	Chr13:114597979-114599111 (-)
AKR/J	ENSMUSG00220012848	lncRNA gene	Chr13:113049165-113050297 (-)
AKR/J	ENSMUSG00220012581	protein coding gene	Chr13:113045957-113050911 (-)
BALB/cJ	ENSMUSG00180010668	protein coding gene	Chr13:115199535-115200907 (-)
BALB/cJ	ENSMUSG00180011075	lncRNA gene	Chr13:115199720-115200852 (-)
C3H/HeJ	ENSMUSG00175002397	lncRNA gene	Chr13:115301505-115302644 (-)
C57BL/6NJ	ENSMUSG00215000751	protein coding gene	Chr13:115300566-115304961 (-)
C57BL/6NJ	ENSMUSG00215000962	lncRNA gene	Chr13:115303774-115304906 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018927	protein coding gene	Chr13:112527467-112528395 (-)
CAST/EiJ	ENSTCUG00005002597	lncRNA gene	Chr13:114344527-114345395 (-)
CBA/J	ENSMUSG00210017359	lncRNA gene	Chr13:114627540-114628679 (-)
DBA/2J	ENSMUSG00185030154	lncRNA gene	Chr13:118394549-118395688 (-)
FVB/NJ	ENSMUSG00205001314	lncRNA gene	Chr13:114039197-114040329 (-)
FVB/NJ	ENSMUSG00205001225	protein coding gene	Chr13:114039012-114040384 (-)
JF1/MsJ	ENSUMUG00000018292	lncRNA gene	Chr13:117841521-117842678 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190009676	lncRNA gene	Chr13:114914237-114915369 (-)
NOD/ShiLtJ	ENSMUSG00190009568	protein coding gene	Chr13:114914052-114915424 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010008069	lncRNA gene	Chr13:113926079-113927015 (-)
SPRET/EiJ	ENSMSPG00010006923	lncRNA gene	Chr13:115787196-115788101 (-)
WSB/EiJ	ENSIUOG00005013261	lncRNA gene	Chr13:114065036-114065980 (-)

Homology

• Gene Tree
  3110070M22Rik
  

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000074635 (Evidence)
• NCBI Gene
  67304

Representative Sequences			Length	Strain/Species
genomic	67304	NCBI Gene Model | MGI Sequence Detail	1128	C57BL/6J
transcript	NR_027974	RefSeq | MGI Sequence Detail	1154	Not Specified
polypeptide	Q9CXM1	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 3110070M22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124202	Chr13:119624938-119624947 (-)	-23 bp
Tssr124201	Chr13:119624870-119624925 (-)	22 bp