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Rab3c Gene Detail
Summary
  • Symbol
    Rab3c
  • Name
    RAB3C, member RAS oncogene family
  • Synonyms
    2700062I01Rik, 3110015B08Rik, 3110037E15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914545
    NCBI Gene: 67295
  • Gene Overview
    MyGene.info: RAB3C
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:110054187-110280996 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 61.19 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1802 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914545
protein coding gene Chr13:110054187-110281047 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020928
protein coding gene Chr13:112440018-112679106 (-)
A/J MGP_AJ_G0020877
protein coding gene Chr13:108007010-108232476 (-)
AKR/J MGP_AKRJ_G0020853
protein coding gene Chr13:111263342-111494526 (-)
BALB/cJ MGP_BALBcJ_G0020878
protein coding gene Chr13:108707503-108935034 (-)
C3H/HeJ MGP_C3HHeJ_G0020667
protein coding gene Chr13:111043079-111268669 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021313
protein coding gene Chr13:115823297-116063851 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018882
protein coding gene Chr13:103394509-103613707 (-)
CAST/EiJ MGP_CASTEiJ_G0020186
protein coding gene Chr13:110611214-110857759 (-)
CBA/J MGP_CBAJ_G0020629
protein coding gene Chr13:120260999-120507407 (-)
DBA/2J MGP_DBA2J_G0020752
protein coding gene Chr13:107724689-107948914 (-)
FVB/NJ MGP_FVBNJ_G0020735
protein coding gene Chr13:106399614-106629953 (-)
LP/J MGP_LPJ_G0020827
protein coding gene Chr13:112526690-112757068 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020763
protein coding gene Chr13:120667256-120912710 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021351
protein coding gene Chr13:110716185-110936420 (-)
PWK/PhJ MGP_PWKPhJ_G0019939
protein coding gene Chr13:106441649-106663371 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019761
protein coding gene Chr13:106975676-107210299 (-)
WSB/EiJ MGP_WSBEiJ_G0020244
protein coding gene Chr13:111287824-111517150 (-)



Homology
more
  • Human Ortholog
    RAB3C, RAB3C, member RAS oncogene family
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RAB3C, RAB3C, member RAS oncogene family
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 115827
    neXtProt AC: NX_Q96E17
    UniProt: Q96E17

  • Chr Location
    5q11.2; chr5:58582188-58859394 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    14 phenotypes from multigenic genotypes
    7 phenotype references
Mice homozygous for a knock-out allele are viable and fertile.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021700 Ensembl Gene Model | MGI Sequence Detail 226810 C57BL/6J ±  kb
transcript ENSMUST00000167824 Ensembl | MGI Sequence Detail 8444 Not Applicable  
polypeptide ENSMUSP00000132945 Ensembl | MGI Sequence Detail 227 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    cDNA 33
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1920367, MGI:1924255, MGI:2145303
References
more
  • Summaries
    All 53
    Developmental Gene Expression 14
    Gene Ontology 11
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:244957 El Shahawy M, et al., Cell fate specification in the lingual epithelium is controlled by antagonistic activities of Sonic hedgehog and retinoic acid. PLoS Genet. 2017 Jul;13(7):e1006914

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory