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Rab3c
Gene Detail
 Symbol
Name
ID
Rab3c
RAB3C, member RAS oncogene family
MGI:1914545
Synonyms 2700062I01Rik, 3110015B08Rik, 3110037E15Rik
Feature Type protein coding gene
Genetic Map
Chromosome 13
61.19 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:110054187-110280206 bp, - strand
From NCBI annotation of GRCm38

  226020 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23420  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab3c

Human
homologs
Human Homolog RAB3C, RAB3C, member RAS oncogene family
NCBI Gene ID 115827
neXtProt AC  NX_Q96E17
Human Chr (Location)  5q13; chr5:58582130-58859394 (+)  GRCh38
Alleles
and
phenotypes
All alleles(4) : Targeted(4)
 
Mice homozygous for a knock-out allele are viable and fertile with no apparent phenotype.
 
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process antigen processing and presentation, protein transport, ...
Component cytosol, membrane, ...
Function GTP binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (12 records)
Data Summary: Results (79)    Tissues (32)    Images (27)
Theiler Stages: 10, 17, 18, 20, 23, 26
Assay TypeResults
RNA in situ 79
cDNA source data(32)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(33) cDNA(32) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000021700 (Evidence)
Entrez Gene67295 (Evidence)
UniGene151600
DFCITC1581823, TC1594067, TC1600360
DoTSDT.55148167, DT.55221333, DT.87037945, DT.97358702
NIA Mouse Gene IndexU035162
Consensus CDS ProjectCCDS26764.1
International Mouse Knockout Project StatusRab3c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 67295 NCBI Gene Model | MGI Sequence Detail 226020 C57BL/6J ±  kb
transcript NM_023852 RefSeq | MGI Sequence Detail 8500 C57BL/6 
polypeptide P62823 UniProt | EBI | MGI Sequence Detail 227 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(8) UniProt(4)
Polymorphisms SNPs within 2kb(1798 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013619 ras-related protein Rab-3C
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(51)
Other
accession IDs
MGI:1920367, MGI:1924255, MGI:2145303

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory