Rab3c
Gene Detail

Symbol Name ID

Rab3c RAB3C, member RAS oncogene family MGI:1914545

Synonyms

2700062I01Rik, 3110015B08Rik, 3110037E15Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 13

61.19 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr13:110054187-110280206 bp, - strand From NCBI annotation of GRCm38   226020 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:23420  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab3c

Human homologs

Human Homolog		RAB3C, RAB3C, member RAS oncogene family
NCBI Gene ID		115827
neXtProt AC		NX_Q96E17
Human Chr (Location)		5q13; chr5:57878939-58147406 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(4) : Targeted(4)
 

Mice homozygous for a knock-out allele are viable and fertile with no apparent phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (14 annotations)

Process	protein transport, regulation of exocytosis, ...
Component	cytosol, membrane, ...
Function	GTP binding, nucleotide binding, ...

External Resources: FuncBase

Expression

Literature Summary: (10 records)
Data Summary: Results (79)    Tissues (32)    Images (27)
Theiler Stages: 10, 17, 18, 20, 23, 26

Assay Type	Results
RNA in situ	79

cDNA source data(32)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(33) cDNA(32) Primer pair(1)
Microarray probesets(4)

Other database links

Ensembl Gene Model	ENSMUSG00000021700 (Evidence)
Entrez Gene	67295 (Evidence)
UniGene	151600
DFCI	TC1581823, TC1594067, TC1600360
DoTS	DT.55148167, DT.55221333, DT.87037945, DT.97358702
NIA Mouse Gene Index	U035162
Consensus CDS Project	CCDS26764.1
International Mouse Knockout Project Status	Rab3c

Sequences

Length	Strain/Species
genomic	67295	NCBI Gene Model | MGI Sequence Detail	226020	C57BL/6J
transcript	NM_023852	RefSeq | MGI Sequence Detail	8500	C57BL/6
polypeptide	P62823	UniProt | EBI | MGI Sequence Detail	227	Not Applicable

All sequences(32) RefSeq(2) UniProt(4)

Polymorphisms

SNPs(1377 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001806	Small GTPase superfamily
InterPro	IPR003579	Small GTPase superfamily, Rab type
InterPro	IPR005225	Small GTP-binding protein domain
Protein Ontology	PR:000013619	ras-related protein Rab-3C

Graphical View of Protein Domain Structure

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(48)

Other accession IDs

MGI:1920367, MGI:1924255, MGI:2145303