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3110039M20Rik Gene Detail
Summary
  • Symbol
    3110039M20Rik
  • Name
    RIKEN cDNA 3110039M20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914543
    NCBI Gene: 67293
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:49389652-49407346 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 21.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    57 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914543
lncRNA gene Chr12:49389652-49407360 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005358
lincRNA gene Chr12:48114167-48133428 (+)
A/J MGP_AJ_G0005341
lincRNA gene Chr12:46409690-46427221 (+)
AKR/J MGP_AKRJ_G0005321
lincRNA gene Chr12:47781570-47800628 (+)
BALB/cJ MGP_BALBcJ_G0005323
lincRNA gene Chr12:46667509-46685765 (+)
C3H/HeJ MGP_C3HHeJ_G0005272
lincRNA gene Chr12:47887592-47904827 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005477
lincRNA gene Chr12:49566023-49588183 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004864
lincRNA gene Chr12:45002288-45019601 (+)
CAST/EiJ MGP_CASTEiJ_G0005219
lincRNA gene Chr12:42952368-42970363 (+)
CBA/J MGP_CBAJ_G0005261
lincRNA gene Chr12:51264497-51284743 (+)
DBA/2J MGP_DBA2J_G0005279
lincRNA gene Chr12:46257875-46275943 (+)
FVB/NJ MGP_FVBNJ_G0005304
lincRNA gene Chr12:45759168-45776429 (+)
LP/J MGP_LPJ_G0005360
lincRNA gene Chr12:48124352-48141832 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005286
lincRNA gene Chr12:52702805-52723207 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005479
lincRNA gene Chr12:47339774-47357262 (+)
PWK/PhJ MGP_PWKPhJ_G0005168
lincRNA gene Chr12:40839265-40857082 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005088
lincRNA gene Chr12:41905643-41922871 (+)
WSB/EiJ MGP_WSBEiJ_G0005267
lincRNA gene Chr12:47756006-47773131 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67293 NCBI Gene Model | MGI Sequence Detail 17695 C57BL/6J ±  kb
transcript NR_026733 RefSeq | MGI Sequence Detail 870 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/26/2020
MGI 6.15
The Jackson Laboratory