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Slc39a10
Gene Detail
Symbol

Name
ID
Slc39a10
solute carrier family 39 (zinc transporter), member 10
MGI:1914515
Synonyms
2900042E17Rik, mKIAA1265
Feature Type
protein coding gene
Genetic Map
Chromosome 1
24.07 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr1:46807544-46892852 bp, - strand
From VEGA annotation of GRCm38

  85309 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:34076  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc39a10

Human
homologs
Human Homolog SLC39A10, solute carrier family 39 (zinc transporter), member 10
NCBI Gene ID 57181
neXtProt AC  NX_Q9ULF5
Human Synonyms  LZT-Hs2
Human Chr (Location)  2q32.3; chr2:195656808-195737702 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(27) : Gene trapped(24) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc39a10 interacts with 367 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process ion transport, metal ion transport, ...
Component integral component of membrane, membrane
Function metal ion transmembrane transporter activity
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (126)    Tissues (33)    Images (33)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 119
RT-PCR 7
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) Genomic(1) cDNA(11) Primer pair(2)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000021430 (Evidence)
Ensembl Gene ModelENSMUSG00000025986 (Evidence)
Entrez Gene227059 (Evidence)
DFCITC1574294
DoTSDT.489248, DT.97396230, DT.97400198
Consensus CDS ProjectCCDS14936.1
International Mouse Knockout Project StatusSlc39a10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021430 VEGA Gene Model | MGI Sequence Detail 85309 C57BL/6J ±  kb
transcript OTTMUST00000050811 VEGA | MGI Sequence Detail 5498 Not Applicable 
polypeptide OTTMUSP00000023810 VEGA | MGI Sequence Detail 833 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(10) UniProt(2)
Polymorphisms
SNPs within 2kb(728 from dbSNP Build 137)    SNPs within 2kb including multiple locations(752)
Protein-related
information
ResourceIDDescription
InterPro IPR003689 Zinc/iron permease
Protein Ontology PR:000015124 zinc transporter ZIP10
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:192203 Balakrishnan A, et al., Role of the inositol polyphosphate-4-phosphatase type II Inpp4b in the generation of ovarian teratomas. Dev Biol. 2013 Jan 1;373(1):118-29
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory