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Gatad1 Gene Detail
Summary
  • Symbol
    Gatad1
  • Name
    GATA zinc finger domain containing 1
  • Synonyms
    2310031E19Rik, 2810047M21Rik, 8430439A17Rik, 9130430G15Rik, B330017N08Rik, Odag
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914460
    NCBI Gene: 67210
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:3639961-3647936 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 2.26 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    23 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914460
protein coding gene Chr5:3632932-3657185 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029260
protein coding gene Chr5:447162-465030 (-)
A/J MGP_AJ_G0029225
protein coding gene Chr5:327983-343896 (-)
AKR/J MGP_AKRJ_G0029173
protein coding gene Chr5:319634-335075 (-)
BALB/cJ MGP_BALBcJ_G0029242
protein coding gene Chr5:559024-573876 (-)
C3H/HeJ MGP_C3HHeJ_G0028962
protein coding gene Chr5:496868-511769 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029691
protein coding gene Chr5:706187-726140 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026934
protein coding gene Chr5:377994-384449 (-)
CAST/EiJ MGP_CASTEiJ_G0028374
protein coding gene Chr5:517694-531442 (-)
CBA/J MGP_CBAJ_G0028924
protein coding gene Chr5:602056-618115 (-)
DBA/2J MGP_DBA2J_G0029074
protein coding gene Chr5:475110-496135 (-)
FVB/NJ MGP_FVBNJ_G0029036
protein coding gene Chr5:384438-398971 (-)
LP/J MGP_LPJ_G0029164
protein coding gene Chr5:485636-500744 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029063
protein coding gene Chr5:410893-425621 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029722
protein coding gene Chr5:448786-462843 (-)
PWK/PhJ MGP_PWKPhJ_G0028096
protein coding gene Chr5:464004-480364 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027929
protein coding gene Chr5:732447-746613 (-)
WSB/EiJ MGP_WSBEiJ_G0028454
protein coding gene Chr5:478503-504999 (-)



Homology
more
  • Human Ortholog
    GATAD1, GATA zinc finger domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GATAD1, GATA zinc finger domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CMD2B, ODAG, RG083M05.2
  • Links
    NCBI Gene ID: 57798
    neXtProt AC: NX_Q8WUU5
    UniProt: Q8WUU5

  • Chr Location
    7q21.2; chr7:92447448-92494631 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 56916
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: GATAD1
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human GATAD1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 67210 NCBI Gene Model | MGI Sequence Detail 7976 C57BL/6J ±  kb
transcript NM_026033 RefSeq | MGI Sequence Detail 2547 C57BL/6  
polypeptide Q920S3 UniProt | EBI | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 15
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1916878, MGI:1918759, MGI:1924747, MGI:3711962
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory