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Gatad1
Gene Detail
 Symbol
Name
ID
Gatad1
GATA zinc finger domain containing 1
MGI:1914460
Synonyms 2310031E19Rik, 2810047M21Rik, 8430439A17Rik, 9130430G15Rik, B330017N08Rik, Odag
Feature Type protein coding gene
Genetic Map
Chromosome 5
2.26 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:3632932-3647934 bp, - strand
From VEGA annotation of GRCm38

  15003 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56916  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Gatad1

Human
homologs
Human Homolog GATAD1, GATA zinc finger domain containing 1
NCBI Gene ID 57798
neXtProt AC  NX_Q8WUU5
Human Synonyms  CMD2B, ODAG, RG083M05.2
Human Chr (Location)  7q21-q22; chr7:92447448-92460067 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human GATAD1
Alleles
and
phenotypes
All alleles(4) : Targeted(2) Gene trapped(2)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process regulation of transcription, DNA-templated
Component nucleus
Function metal ion binding, sequence-specific DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (39)    Tissues (23)   
Theiler Stages: 21, 22, 25, 28
Assay TypeResults
RNA in situ 21
Northern blot 10
RT-PCR 8
cDNA source data(14)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(15) cDNA(14) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000028536 (Evidence)
Ensembl Gene ModelENSMUSG00000007415 (Evidence)
Entrez Gene67210 (Evidence)
DFCITC1577895, TC1587712, TC1653363
DoTSDT.101725123, DT.40143608, DT.492617, DT.91593414
NIA Mouse Gene IndexU005282, U141872
Consensus CDS ProjectCCDS19066.1
International Mouse Knockout Project StatusGatad1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028536 VEGA Gene Model | MGI Sequence Detail 15003 C57BL/6J ±  kb
transcript OTTMUST00000070720 VEGA | MGI Sequence Detail 2545 Not Applicable 
polypeptide OTTMUSP00000036083 VEGA | MGI Sequence Detail 266 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(55 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000679 Zinc finger, GATA-type
InterPro IPR013088 Zinc finger, NHR/GATA-type
Protein Ontology PR:000029506 GATA zinc finger domain-containing protein 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1916878, MGI:1918759, MGI:1924747, MGI:3711962

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory