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Spats2l Gene Detail
Summary
  • Symbol
    Spats2l
  • Name
    spermatogenesis associated, serine-rich 2-like
  • Synonyms
    2810022L02Rik, A230104H11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914448
    NCBI Gene: 67198
  • Gene Overview
    MyGene.info: SPATS2L
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:57774162-57948394 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 28.85 cM, cytoband C2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1234 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914448
 protein coding gene Chr1:57774162-57948398 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016042
 protein coding gene Chr1:57602338-57779073 (+)
A/J MGP_AJ_G0016025
 protein coding gene Chr1:55596008-55768585 (+)
AKR/J MGP_AKRJ_G0015981
 protein coding gene Chr1:57090773-57272336 (+)
BALB/cJ MGP_BALBcJ_G0015980
 protein coding gene Chr1:55628152-55801646 (+)
C3H/HeJ MGP_C3HHeJ_G0015812
 protein coding gene Chr1:57368229-57544355 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016433
 protein coding gene Chr1:59969419-60146324 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014154
 protein coding gene Chr1:51533612-51713449 (+)
CAST/EiJ MGP_CASTEiJ_G0015394
 protein coding gene Chr1:56627236-56803972 (+)
CBA/J MGP_CBAJ_G0015784
 protein coding gene Chr1:61714728-61892258 (+)
DBA/2J MGP_DBA2J_G0015885
 protein coding gene Chr1:55003058-55176060 (+)
FVB/NJ MGP_FVBNJ_G0015887
 protein coding gene Chr1:54337668-54509909 (+)
LP/J MGP_LPJ_G0015957
 protein coding gene Chr1:58497918-58671136 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015907
 protein coding gene Chr1:64734127-64909943 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016480
 protein coding gene Chr1:57077815-57253953 (+)
PWK/PhJ MGP_PWKPhJ_G0015180
 protein coding gene Chr1:54370350-54548863 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014961
 protein coding gene Chr1:56654827-56832623 (+)
WSB/EiJ MGP_WSBEiJ_G0015457
 protein coding gene Chr1:56758629-56931552 (+)



Homology
more
  • Human Ortholog
    SPATS2L, spermatogenesis associated serine rich 2 like
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SPATS2L, spermatogenesis associated serine rich 2 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DNAPTP6, SGNP
  • Links
    NCBI Gene ID: 26010
    neXtProt AC: NX_Q9NUQ6
    UniProt: Q9NUQ6

  • Chr Location
    2q33.1; chr2:200305881-200482263 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    136
  • Tissues
    37
  • cDNA Data
    51
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038305 Ensembl Gene Model | MGI Sequence Detail 174233 C57BL/6J ±  kb
transcript ENSMUST00000167085 Ensembl | MGI Sequence Detail 3929 Not Applicable  
polypeptide ENSMUSP00000133054 Ensembl | MGI Sequence Detail 578 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    8 Sequences
  • InterPro Domains
    IPR009816 Protein of unknown function DUF1387
    IPR009060 UBA-like superfamily
Molecular
Reagents
less
  • All nucleic 51
    cDNA 51

    Microarray probesets 7
Other
Accession IDs
less
MGI:1925009, MGI:2138144, MGI:2138274, MGI:2138335, MGI:2138588
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
01/08/2019
MGI 6.13 		The Jackson Laboratory