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Psmd9 Gene Detail
Summary
  • Symbol
    Psmd9
  • Name
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
  • Synonyms
    1500011J20Rik, Bridge-1, P27
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914401
    NCBI Gene: 67151
  • Gene Overview
    MyGene.info: PSMD9
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:123228190-123250126 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 62.85 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    107 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914401
protein coding gene Chr5:123169413-123250131 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030066
protein coding gene Chr5:126858367-126968025 (+)
A/J MGP_AJ_G0030031
protein coding gene Chr5:121602888-121706095 (+)
AKR/J MGP_AKRJ_G0029967
protein coding gene Chr5:125520264-125632372 (+)
BALB/cJ MGP_BALBcJ_G0030042
protein coding gene Chr5:122937397-123035115 (+)
C3H/HeJ MGP_C3HHeJ_G0029759
protein coding gene Chr5:126145166-126244882 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030495
protein coding gene Chr5:131750716-131862835 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027721
protein coding gene Chr5:116185561-116246592 (+)
CAST/EiJ MGP_CASTEiJ_G0029168
protein coding gene Chr5:125251391-125337630 (+)
CBA/J MGP_CBAJ_G0029729
protein coding gene Chr5:136922090-137054424 (+)
DBA/2J MGP_DBA2J_G0029879
protein coding gene Chr5:121649123-121726787 (+)
FVB/NJ MGP_FVBNJ_G0029835
protein coding gene Chr5:120651080-120741907 (+)
LP/J MGP_LPJ_G0029968
protein coding gene Chr5:127393256-127507140 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029866
protein coding gene Chr5:140597032-140694879 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030536
protein coding gene Chr5:125123806-125213928 (+)
PWK/PhJ MGP_PWKPhJ_G0028882
protein coding gene Chr5:120437598-120522965 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028719
protein coding gene Chr5:122810851-122872607 (+)
WSB/EiJ MGP_WSBEiJ_G0029243
protein coding gene Chr5:125786415-125866075 (+)



Homology
more
  • Human Ortholog
    PSMD9, proteasome 26S subunit, non-ATPase 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PSMD9, proteasome 26S subunit, non-ATPase 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    p27, Rpn4
  • Links
    NCBI Gene ID: 5715
    neXtProt AC: NX_O00233
    UniProt: O00233

  • Chr Location
    12q24.31; chr12:121888731-121917865 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2106
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PSMD9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67151 NCBI Gene Model | MGI Sequence Detail 21937 C57BL/6J ±  kb
transcript NM_026000 RefSeq | MGI Sequence Detail 2610 C57BL/6  
polypeptide Q9CR00 UniProt | EBI | MGI Sequence Detail 222 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 55
    cDNA 54
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1921464
References
more
  • Summaries
    All 41
    Developmental Gene Expression 4
    Gene Ontology 7
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory