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Lrrc40 Gene Detail
Summary
  • Symbol
    Lrrc40
  • Name
    leucine rich repeat containing 40
  • Synonyms
    2610040E16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914394
    NCBI Gene: 67144
  • Gene Overview
    MyGene.info: LRRC40
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:158036682-158067090 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 81.65 cM, cytoband H4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914394
protein coding gene Chr3:158036662-158068487 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028016
protein coding gene Chr3:162194864-162226470 (+)
A/J MGP_AJ_G0027974
protein coding gene Chr3:156284663-156316639 (+)
AKR/J MGP_AKRJ_G0027940
protein coding gene Chr3:160434669-160466403 (+)
BALB/cJ MGP_BALBcJ_G0027986
protein coding gene Chr3:156098029-156129804 (+)
C3H/HeJ MGP_C3HHeJ_G0027716
protein coding gene Chr3:160833673-160866115 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028429
protein coding gene Chr3:167511615-167543748 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025768
protein coding gene Chr3:150894635-150926530 (+)
CAST/EiJ MGP_CASTEiJ_G0027169
protein coding gene Chr3:160979912-161014989 (+)
CBA/J MGP_CBAJ_G0027691
protein coding gene Chr3:173458108-173491588 (+)
DBA/2J MGP_DBA2J_G0027831
protein coding gene Chr3:155332438-155365030 (+)
FVB/NJ MGP_FVBNJ_G0027798
protein coding gene Chr3:152682834-152714692 (+)
LP/J MGP_LPJ_G0027942
protein coding gene Chr3:163525708-163557443 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027831
protein coding gene Chr3:182043202-182075580 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028488
protein coding gene Chr3:160113233-160147511 (+)
PWK/PhJ MGP_PWKPhJ_G0026892
protein coding gene Chr3:155261518-155293846 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026720
protein coding gene Chr3:158327457-158359317 (+)
WSB/EiJ MGP_WSBEiJ_G0027249
protein coding gene Chr3:161077520-161110935 (+)



Homology
more
  • Human Ortholog
    LRRC40, leucine rich repeat containing 40
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRRC40, leucine rich repeat containing 40
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ677H15.1
  • Links
    NCBI Gene ID: 55631
    neXtProt AC: NX_Q9H9A6
    UniProt: Q9H9A6

  • Chr Location
    1p31.1; chr1:70144802-70205678 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9825
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRRC40
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67144 NCBI Gene Model | MGI Sequence Detail 30409 C57BL/6J ±  kb
transcript NM_024194 RefSeq | MGI Sequence Detail 2741 Not Specified  
polypeptide Q9CRC8 UniProt | EBI | MGI Sequence Detail 602 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    8 Sequences
  • InterPro Domains
    IPR001611 Leucine-rich repeat
    IPR025875 Leucine rich repeat 4
    IPR032675 Leucine-rich repeat domain superfamily
    IPR003591 Leucine-rich repeat, typical subtype
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 5
Other
Accession IDs
less
MGI:2139803
References
more
  • Summaries
    All 30
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory