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Nop56
Gene Detail
 Symbol
Name
ID
Nop56
NOP56 ribonucleoprotein
MGI:1914384
Synonyms 2310044F10Rik, 56kDa with KKE/D repeat, Nol5a, NOP56
Feature Type protein coding gene
Genetic Map
Chromosome 2
63.20 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:130274430-130279313 bp, + strand
From VEGA annotation of GRCm38

  4884 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4660  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Nop56

Human
homologs
Human Homolog NOP56, NOP56 ribonucleoprotein
NCBI Gene ID 10528
neXtProt AC  NX_O00567
Human Synonyms  NOL5A, SCA36
Human Chr (Location)  20p13; chr20:2652532-2658393 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human NOP56
Mutations,
alleles, and
phenotypes
All mutations/alleles(19) : Gene trapped(18) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Nop56 interacts with 112 markers (Mir1a-1, Mir1a-2, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process ribosome biogenesis
Component cytoplasm, membrane, ...
Function poly(A) RNA binding, snoRNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (12)    Tissues (9)   
Theiler Stages: 24, 26, 28
Assay TypeResults
RNA in situ 12
cDNA source data(247)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(251) cDNA(251)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000015495 (Evidence)
Ensembl Gene ModelENSMUSG00000027405 (Evidence)
Entrez Gene67134 (Evidence)
UniGene29363
DFCITC1573467, TC1603008
DoTSDT.101123091, DT.101378708, DT.101385567, DT.110879128, DT.494808
NIA Mouse Gene IndexU002469, U045467
Consensus CDS ProjectCCDS16737.1
International Mouse Knockout Project StatusNop56
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015495 VEGA Gene Model | MGI Sequence Detail 4884 C57BL/6J ±  kb
transcript OTTMUST00000036787 VEGA | MGI Sequence Detail 1877 Not Applicable 
polypeptide OTTMUSP00000016508 VEGA | MGI Sequence Detail 580 Not Applicable 

For the selected sequences
All sequences(109) RefSeq(10) UniProt(11)
Polymorphisms SNPs within 2kb(55 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012974 NOP5, N-terminal
InterPro IPR002687 Nop domain
InterPro IPR012976 NOSIC
Protein Ontology PR:000011324 nucleolar protein 56
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory