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Nop56
Gene Detail
Symbol

Name
ID
Nop56
NOP56 ribonucleoprotein
MGI:1914384
Synonyms
2310044F10Rik, 56kDa with KKE/D repeat, Nol5a, NOP56
Feature Type
protein coding gene
Genetic Map
Chromosome 2
63.20 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:130274430-130279313 bp, + strand
From VEGA annotation of GRCm38

  4884 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4660  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: NOP56
Gene Tree: Nop56

Human
homologs
NOP56, NOP56 ribonucleoprotein
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10528
neXtProt AC: NX_O00567

Human Synonyms: NOL5A, SCA36

Human Chr (Location): 20p13; chr20:2652532-2658393 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human NOP56

Mutations,
alleles, and
phenotypes
All mutations/alleles(19) : Gene trapped(18) Targeted(1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Nop56 interacts with 112 markers (Mir1a-1, Mir1a-2, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process ribosome biogenesis, rRNA modification
Component box C/D snoRNP complex, cytoplasm, ...
Function poly(A) RNA binding, snoRNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (12)    Tissues (10)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 12
cDNA source data(247)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase nop56    NEW 
Molecular
reagents
All nucleic(251) cDNA(251)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000015495 (Evidence)
Ensembl Gene Model ENSMUSG00000027405 (Evidence)
Entrez Gene 67134 (Evidence)
UniGene 29363
DFCI TC1573467, TC1603008
DoTS DT.101123091, DT.110879128, DT.101385567, DT.101378708, DT.494808
NIA Mouse Gene Index U045467, U002469
Consensus CDS Project CCDS16737.1
International Mouse Phenotyping Consortium Status Nop56
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015495 VEGA Gene Model | MGI Sequence Detail 4884 C57BL/6J ±  kb
transcript OTTMUST00000036787 VEGA | MGI Sequence Detail 1877 Not Applicable 
polypeptide OTTMUSP00000016508 VEGA | MGI Sequence Detail 580 Not Applicable 

For the selected sequences
All sequences(108) RefSeq(8) UniProt(11)
Polymorphisms
SNPs within 2kb(55 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012974 NOP5, N-terminal
InterPro IPR002687 Nop domain
InterPro IPR012976 NOSIC
Protein Ontology PR:000011324 nucleolar protein 56
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory