About   Help   FAQ
Nop56 Gene Detail
Summary
  • Symbol
    Nop56
  • Name
    NOP56 ribonucleoprotein
  • Synonyms
    2310044F10Rik, 56kDa with KKE/D repeat, Nol5a, NOP56
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914384
    NCBI Gene: 67134
  • Gene Overview
    MyGene.info: NOP56
Location & Maps
more
  • Sequence Map
    Chr2:130274430-130279313 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      4884 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    NOP56, NOP56 ribonucleoprotein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NOP56, NOP56 ribonucleoprotein
    Orthology source: HGNC, HomoloGene
  • Synonyms
    NOL5A, SCA36
  • Links
    NCBI Gene ID: 10528
    neXtProt AC: NX_O00567

  • Chr Location
    20p13; chr20:2652532-2658393 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 4660
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: NOP56
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human NOP56 associations

Human Disease Mouse Models
       Spinocerebellar Ataxia 36; SCA36   OMIM: 614153
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    21
  • Chemically induced (other)
    1
  • Gene trapped
    18
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Nop56
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015495 VEGA Gene Model | MGI Sequence Detail 4884 C57BL/6J ±  kb
transcript OTTMUST00000036787 VEGA | MGI Sequence Detail 1877 Not Applicable  
polypeptide OTTMUSP00000016508 VEGA | MGI Sequence Detail 580 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    55 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 251
    cDNA 251

    Microarray probesets 4
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/26/2016
MGI 6.03
The Jackson Laboratory