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Yaf2
Gene Detail
Symbol

Name
ID
Yaf2
YY1 associated factor 2
MGI:1914307
Synonyms
2810021M11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 15
47.39 cM, cytoband F1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:93284278-93336935 bp, - strand
From VEGA annotation of GRCm38

  52658 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4203  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Yaf2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Radiation induced(1)
Genomic Mutations involving Yaf2 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(2)
Interactions
Yaf2 interacts with 281 markers (Mir1b, Mir10a, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated
Component nucleus
Function metal ion binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (104)    Tissues (60)    Images (21)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 95
RT-PCR 9
cDNA source data(56)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase yaf2 ; ZFIN yaf2    NEW 
Molecular
reagents
All nucleic(58) cDNA(56) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000017284 (Evidence)
Ensembl Gene Model ENSMUSG00000022634 (Evidence)
Entrez Gene 67057 (Evidence)
UniGene 4714
DFCI TC1578782, TC1588020
DoTS DT.97363391, DT.97377650
NIA Mouse Gene Index U036562
Consensus CDS Project CCDS27765.1
International Mouse Phenotyping Consortium Status Yaf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017284 VEGA Gene Model | MGI Sequence Detail 52658 C57BL/6J ±  kb
transcript OTTMUST00000041894 VEGA | MGI Sequence Detail 1676 Not Applicable 
polypeptide OTTMUSP00000018841 VEGA | MGI Sequence Detail 179 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(5) UniProt(1)
Polymorphisms
SNPs within 2kb(229 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001876 Zinc finger, RanBP2-type
Protein Ontology PR:000017521 YY1-associated factor 2
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:212360 Basu A, et al., YY1 DNA binding and interaction with YAF2 is essential for Polycomb recruitment. Nucleic Acids Res. 2014 Feb;42(4):2208-23
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory