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Vma21
Gene Detail
Symbol

Name
ID
Vma21
VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
MGI:1914298
Synonyms
2610030H06Rik
Feature Type
protein coding gene
Genetic Map
Chromosome X
37.07 cM, cytoband C2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:71815924-71839757 bp, + strand
From VEGA annotation of GRCm38

  23834 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:134430  Vertebrate Homology Class
1 mouse; 2 rat; 1 rhesus macaque; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Vma21

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Vma21 interacts with 360 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component cytoplasmic vesicle, endoplasmic reticulum, ...
External Resources: FuncBase
Expression
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) cDNA(14)
Microarray probesets(10)
Other database
links
VEGA Gene ModelOTTMUSG00000017818 (Evidence)
Ensembl Gene ModelENSMUSG00000073131 (Evidence)
Entrez Gene67048 (Evidence)
DFCITC1674917, TC1598211, TC1632131, TC1606963, TC1577606
DoTSDT.91322557, DT.91317368, DT.528744, DT.101407808, DT.102552051
NIA Mouse Gene IndexU092663, U019920, U062221
Consensus CDS ProjectCCDS41000.1, CCDS72388.1, CCDS72389.1
International Mouse Knockout Project StatusVma21
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017818 VEGA Gene Model | MGI Sequence Detail 23834 C57BL/6J ±  kb
transcript OTTMUST00000043143 VEGA | MGI Sequence Detail 4290 Not Applicable 
polypeptide OTTMUSP00000019408 VEGA | MGI Sequence Detail 134 Not Applicable 

For the selected sequences
All sequences(70) RefSeq(8) UniProt(5)
Polymorphisms
SNPs within 2kb(59 from dbSNP Build 137)    SNPs within 2kb including multiple locations(65)
Protein-related
information
ResourceIDDescription
InterPro IPR019013 Vacuolar ATPase assembly integral membrane protein VMA21-like domain
Protein Ontology PR:000030224 vacuolar ATPase assembly integral membrane protein VMA21
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)
Other
accession IDs
MGI:2147916

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory