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Thap4 Gene Detail
Summary
  • Symbol
    Thap4
  • Name
    THAP domain containing 4
  • Synonyms
    2010320B01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914276
    NCBI Gene: 67026
  • Gene Overview
    MyGene.info: THAP4
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:93705391-93754838 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.29 cM, cytoband D
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    229 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914276
protein coding gene Chr1:93701935-93754864 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016347
protein coding gene Chr1:95342183-95398270 (-)
A/J MGP_AJ_G0016328
protein coding gene Chr1:91928380-91982029 (-)
AKR/J MGP_AKRJ_G0016289
protein coding gene Chr1:94637184-94692400 (-)
BALB/cJ MGP_BALBcJ_G0016284
protein coding gene Chr1:92106068-92159246 (-)
C3H/HeJ MGP_C3HHeJ_G0016113
protein coding gene Chr1:94896456-94952789 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016743
protein coding gene Chr1:98962569-99020884 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014461
protein coding gene Chr1:86170486-86223203 (-)
CAST/EiJ MGP_CASTEiJ_G0015696
protein coding gene Chr1:94231055-94286618 (-)
CBA/J MGP_CBAJ_G0016087
protein coding gene Chr1:102175104-102232804 (-)
DBA/2J MGP_DBA2J_G0016192
protein coding gene Chr1:91134197-91186184 (-)
FVB/NJ MGP_FVBNJ_G0016191
protein coding gene Chr1:90194267-90247614 (-)
LP/J MGP_LPJ_G0016263
protein coding gene Chr1:96519466-96579486 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016216
protein coding gene Chr1:105262863-105315864 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016782
protein coding gene Chr1:94662346-94729816 (-)
PWK/PhJ MGP_PWKPhJ_G0015481
protein coding gene Chr1:90560200-90614627 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015265
protein coding gene Chr1:93605118-93662074 (-)
WSB/EiJ MGP_WSBEiJ_G0015756
protein coding gene Chr1:94480747-94543259 (-)



Homology
more
  • Human Ortholog
    THAP4, THAP domain containing 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    THAP4, THAP domain containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CGI-36, PP238
  • Links
    NCBI Gene ID: 51078
    neXtProt AC: NX_Q8WY91
    UniProt: Q8WY91

  • Chr Location
    2q37.3; chr2:241584405-241637543 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12075
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: THAP4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67026 NCBI Gene Model | MGI Sequence Detail 49448 C57BL/6J ±  kb
transcript NM_025920 RefSeq | MGI Sequence Detail 2160 C57BL/6  
polypeptide Q6P3Z3 UniProt | EBI | MGI Sequence Detail 569 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 74
    cDNA 73
    Primer pair 1

    Microarray probesets 6
References
more
  • Summaries
    All 35
    Developmental Gene Expression 6
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory